| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1111 |
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| Symbol | |
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| ID | 4626241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 1388076 |
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| End bp | 1390940 |
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| Gene Length | 2865 bp |
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| Protein Length | 954 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 639796327 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_942548 |
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| Protein GI | 119944868 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.837397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATCA GTTACAAAAA AATATTTCCA AAATATATCG GTTTTCTGTT GATCGTTAGC
GTGATCCCTC TGTTAGCCGT CGGGATTATT TCATATCATA ATGCCAGCCA AGCAATCCAG
GATGCCGCAA GACGATTCTC AACTGAGTTA CTTAATCATA AAATTGAATT GTTGGAATCA
AAATTAGATC AAGTTGAAAG TTTAATTGTT AATATATCCA GTGTAGAAGC GATAACCAAT
GCACTTGATG ATGAATTCTC TGAGTCGAAT ACCTACACTG ATCTCGCCAC ACAGGCCAAA
ATCGGCTACA TACTAAATGG TTACTTAAGC CTTCAAGGGT TAGTTTCAAT CGATATTTTC
ACTTCTGGTG GCACACAATA CCATGTTGGC GACAGCTTAA ATGTAGGAGA AAATAGAAAC
GACATTAGAG AGCTGATTTG GCAAGAAACA CTTGCTAGTC CGAAACAGAT ATATTGGTCA
GGAATATTAC CTAACGTTAA TAAATCATCA AGCCATAAAA TGGTGTTAGG CGCAGCAAAG
ATAATTAAAA AGATTGATCA TATCTCATTG AAGACTCGAC CTATTGCATT GATATTAGTC
AGCATTAATA TAGAAAATTT AAATGAAAGC ATTACGGATA AAGAGAGCGA TGGGGGCGTT
AGCGCCTATC TTATCGATCA ACGAGATAAT ATAGCTTATA GCCATAAAAA GAATGAGATA
GGCCAATCTG TAAAAGAGCT CTTTCCTTTT GCTGTCGCTA AGCAGCAGCG TTTGAACAGC
TATACCTGGA ATGGAAACGA CTACTTTATT CAAAGCCGTG CAATCACTAA GTATAATTGG
CAAATTTTCA GCCTGATTCC TCAAAAAAAT CTGCGCCGGG ATATAAATAG AATAGGGGTT
ATTACCTTCT ACCTTGTATT CGCGGGAATA TTATTGACCT GTATTGCTGG TTGGTATTTT
TCTCATAATA TTGTACAGCC TATCAAAGAT GTTATTACCG CCTACAAGGG CCTGCAAAAT
AAGACGCTTA AACAGACAAA GAGACTTCCT GTAAGAAGTG ATGATGAAGT GGGTGAATTG
GTAAAATGGT TCAATACCTC TTTGGATAAT CTGGAGGCGC GTGAGTTATA CGAAAATGCG
CTTAGGGAAA GTGAAGAGCG ATATGCATTA GTTGCCAATG CTACAAATGA AGGCTTATGG
GACTGGAATA TCACAAAAAA TGAGATGTAT TTTTCACCCC GGTTTTTTGC TCTTCTTGGA
AAAAATGTAG ATGAGAATAG TTCCTTAAAT ACTATCGAAG ACTGGTATAA GCTAATTCAT
CCAAAGGATA TTATTTTGGT AAAATCAGCA ATAAATGATT GTTTGAATGG TAAAACAGCC
CATTTCCAAT GCGAGTACAG ATTATTACAT CATGATGGCC GTTATCGTTG GATTCTTTCA
AGGGGACTTG CCATTTGGGA TAGTTCTGGT GAGGCAATAC GAATGGCCGC TAGTCACAGT
GATATTAGCG ATCAGAGAGA TGCAAAAGAC AAATTAAGAT ATGATGCCTT TCACGATAGT
CTTACGGGTC TTTATAATAG ATCTTGGTTC GTAAGTTATT TACAGGAATT ATTAAGTGGC
CACTCAAGAA ACAAAAATTT AAATTTTGCC GTCCTATTTT TAGATTTGGA CCAATTCAAG
CTAGTCAATG ACACTCTCGG TCATGCTGCT GGTGACAAGT TACTCATTTA TGTTGCTGAG
CGCTTAAAAA AATGTCTCCG TGAGACCGAT ATGCTTGCAC GTTTTGGTGG GGATGAATTT
GTTATTTTGC TTAAAAGTGA TGAAAATTAT CGTTTTATAC AAATTGCTGA GCGAATTATT
GAACAACTTT CCTTATCGTT CTCAATAAAT AATAACTATA TCCACACAGG TGCAAGTATT
GGTATCACGC TACTTGAGAC AGGGTATCAG GATGCTTACG AAATGCTAAG GGATGCCGAT
ATCGCAATGT ATCGAGCTAA GCTCAATGGT AAAAATTGCC ACATTGTTTT TGATGAAGAG
ATGCGTTCTC AACTGCTTAA GCAAGTTGAC ACCGAAAAAT TGCTGCGACA AGCCATCGAA
AACGATGAAT TGACACTCTA TTATCAGCCT ATTATCTCAT TGTCTGATGG GAGACTTACT
GGTTTTGAAG CGCTATTAAG ATGGAACAAT CCAATACTTG GCAATGTTAG CCCTGATGTT
TTTATTCCGT TAGCTGAAGC TAACGGTACT ATTATTCAGT TGGGCCAGTG GGTCTTTGAA
TCCGCATTTA TTCAATTGAA AGCGTGGAAA GAAGAGTTTA CAGGCTTTGA TAACTTAGTC
TTGTCGATTA ATATGTCACC CGTACAGTTT CTCGATAAAC TATTTTTGAA AAATTTTCCT
AAACTAATGG ATACCTACAA TATTAAAGGC TCAGAGATAG CCATTGAGAT TACAGAAACC
GCAATCATTC ACAAAAAAGC ATTAGCAATC AAAGTTATAA ATGATTTTAA AAAGTACGGT
ATTCACATTC ATTTGGATGA TTTCGGAACA GGCTACTCCT CTATTAGCCA CTTGGTTGGG
TTTCAAATAG ATCTTATAAA AATTGATCGT TCGTTTATTG AGCTGCTCGG TGTAAATTCG
AAGGAAGATA AGCTCGTTCA AGCAATCATT AATTTTGCTC ATAACCTTGG TATTAAATGC
ACCGCAGAGG GAATAGAAGA AGCAGCCCAA CAAAGATTAT TAAGTATCGC AAACTGTGAT
TACGCTCAGG GTTACTTTAT AGCGAAGCCT GCACCAGCCA GTCAATTAAC GGAATTTATA
CGCGAGCATT TATCTAGATC TAAAGGTTTG CTACCCCCTG AATAA
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| Protein sequence | MNISYKKIFP KYIGFLLIVS VIPLLAVGII SYHNASQAIQ DAARRFSTEL LNHKIELLES
KLDQVESLIV NISSVEAITN ALDDEFSESN TYTDLATQAK IGYILNGYLS LQGLVSIDIF
TSGGTQYHVG DSLNVGENRN DIRELIWQET LASPKQIYWS GILPNVNKSS SHKMVLGAAK
IIKKIDHISL KTRPIALILV SINIENLNES ITDKESDGGV SAYLIDQRDN IAYSHKKNEI
GQSVKELFPF AVAKQQRLNS YTWNGNDYFI QSRAITKYNW QIFSLIPQKN LRRDINRIGV
ITFYLVFAGI LLTCIAGWYF SHNIVQPIKD VITAYKGLQN KTLKQTKRLP VRSDDEVGEL
VKWFNTSLDN LEARELYENA LRESEERYAL VANATNEGLW DWNITKNEMY FSPRFFALLG
KNVDENSSLN TIEDWYKLIH PKDIILVKSA INDCLNGKTA HFQCEYRLLH HDGRYRWILS
RGLAIWDSSG EAIRMAASHS DISDQRDAKD KLRYDAFHDS LTGLYNRSWF VSYLQELLSG
HSRNKNLNFA VLFLDLDQFK LVNDTLGHAA GDKLLIYVAE RLKKCLRETD MLARFGGDEF
VILLKSDENY RFIQIAERII EQLSLSFSIN NNYIHTGASI GITLLETGYQ DAYEMLRDAD
IAMYRAKLNG KNCHIVFDEE MRSQLLKQVD TEKLLRQAIE NDELTLYYQP IISLSDGRLT
GFEALLRWNN PILGNVSPDV FIPLAEANGT IIQLGQWVFE SAFIQLKAWK EEFTGFDNLV
LSINMSPVQF LDKLFLKNFP KLMDTYNIKG SEIAIEITET AIIHKKALAI KVINDFKKYG
IHIHLDDFGT GYSSISHLVG FQIDLIKIDR SFIELLGVNS KEDKLVQAII NFAHNLGIKC
TAEGIEEAAQ QRLLSIANCD YAQGYFIAKP APASQLTEFI REHLSRSKGL LPPE
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