| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1014 |
|---|
| Symbol | |
|---|
| ID | 4626267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 1276275 |
|---|
| End bp | 1277936 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639796230 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_942452 |
|---|
| Protein GI | 119944772 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.176827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTAA CCGATAAAGC TTGGTATAAA AGCTATCCCA GTGATGTGCC TCACGATATT
AATATGACTG AGTTCGATAA TTTATTATCT TTGTTTGAAC ATTGCTGCAA AAAATACGCG
GATAATATTG CCTTTATCAA TATGGGCCAT TCACTCACTT ATCAGGAGTT AGATTTAAAG
AGCAAAGCCT TTGCGTCCTA TTGCCAAAAC ACACTTTTGA TGCAACCGGG GGAAAGGATT
GCATTGATGA TGCCCAATCT GCTGCAGTAT CCAATTGCAT TATTTGGTGC ATTACGGGCA
GGACTGGTGG TGGTTAATAT TAATCCGCTG TATACCCCAA GAGAGCTGCT TCACCCCTTA
AAAGATTCGG GTGCAACGGC TATTGTGGCG GTTACCAATT TTGGTAACAG TCTGCAGCAG
GTGCTGGCAG ATACCGCTAT TAAACATATT ATTTTAACCC GCATTGGTGA TCAATTAGCC
GCTCACAAAC GCACTCTGGT TAATTTTGTC ATTAAATATA TTAAAAGAAT GGTGCCTAAA
TATTATCTGC CATCGGCTAT TTCAATGCGC AGAGTATTAA CCCAGGGAGC ATTGCAATCT
TATAGTAGAC CGACTGTTTT ACCGTCTGAT ATTGCCTTTT TACAATACAC AGGCGGCACA
ACCGGTATTG CTAAAGGGGC CGTATTGACC CATCAAAATA TTATAAGCAA TGTACTTCAG
GTTTTCGCCC ATTTTGGTCC AAGAACATTA TTGGATAAAG AAAAAGCGGT CACCCCTTTA
CCCCTTTACC ATATTTTCGC CAATACCGTC AGTATGATGA TGCTGATGTT TATGGGCGGA
CAAAATCTAT TAATAACGAA TCCAAGAGAT ATCAAAAGTT TTGTAAAAGA TTTACAAAAG
TACCCTTTTA CTATGTTATT TGGCTTAAAT ACACTGTTAA ATGCGCTATT AAAAACCCCT
TCCTTTAGAG CACTCGACTT TAGCCAGGCG CGCATTGTTA TTGCCGGCGG GATGGCAACC
CAAAAAAAGA TAGCGGCCGA ATGGGAAGCA TTGACCGGCA TGACTATTAT TGAAGGTTAC
GGGCTAACCG AATGCTCACC CGTTGTAGCG GGCGGTCTCC ATACGCAGCA ACGTTTTCAG
GCAAATATTG GTGTACCACT TCCGAGTACG GATATGCGTA TTGCCGATGT TAACGATAAC
CCGCTTACGG TCGGTGAAAT TGGTGAAATA CAAATTAAAG GCCCGCAGGT GATGCCCGGT
TACTGGCAGC AGCCGCAAGA AAGCGAGAAT GCTTTTACCC AGGATGGTTT TTTTAAAACA
GGTGATATTG GGCAAATGGA TGATCGCGGC TTTTTCACCC TTGTGGATCG CCAAAAAGAT
ATGATGTTAG TCTCCGGGTT TAATGTTTAT CCTTCTGAAA TTGAAGAGGT GGCAGTACTG
CATCCAAACA TTATTGAAGC AGCGGCTATT GGTATCCCTG ATGAAATAAT CGGCGAAAAA
ATAAAATTAT TCTATGTTAG CGATATTCCT TTAAGCAATA AAGAAATCCG ATCTCACTGT
AAAAAATATC TGACCGGTTA TAAGATTCCG CGCTTATTTG AACAAAGAGA TGCACTGCCT
AAAAGTAATG TCGGCAAGAT ACTGCGTAAG GATCTTAGGT AA
|
|---|
| Protein sequence | MTLTDKAWYK SYPSDVPHDI NMTEFDNLLS LFEHCCKKYA DNIAFINMGH SLTYQELDLK
SKAFASYCQN TLLMQPGERI ALMMPNLLQY PIALFGALRA GLVVVNINPL YTPRELLHPL
KDSGATAIVA VTNFGNSLQQ VLADTAIKHI ILTRIGDQLA AHKRTLVNFV IKYIKRMVPK
YYLPSAISMR RVLTQGALQS YSRPTVLPSD IAFLQYTGGT TGIAKGAVLT HQNIISNVLQ
VFAHFGPRTL LDKEKAVTPL PLYHIFANTV SMMMLMFMGG QNLLITNPRD IKSFVKDLQK
YPFTMLFGLN TLLNALLKTP SFRALDFSQA RIVIAGGMAT QKKIAAEWEA LTGMTIIEGY
GLTECSPVVA GGLHTQQRFQ ANIGVPLPST DMRIADVNDN PLTVGEIGEI QIKGPQVMPG
YWQQPQESEN AFTQDGFFKT GDIGQMDDRG FFTLVDRQKD MMLVSGFNVY PSEIEEVAVL
HPNIIEAAAI GIPDEIIGEK IKLFYVSDIP LSNKEIRSHC KKYLTGYKIP RLFEQRDALP
KSNVGKILRK DLR
|
|---|
| |