| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1008 |
|---|
| Symbol | gltD |
|---|
| ID | 4626261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 1267688 |
|---|
| End bp | 1269157 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639796224 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_942446 |
|---|
| Protein GI | 119944766 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAGC CAACTGGATT TTTAGAATTA GGTCGTGAAC TACCTGGTAG AGTACCAGTA
ATAGAACGGA TCAAAAATAA TAAAGAGTTT GTAAAAAACG ATGAGTTTGG CGACAAAGTC
AGTGACCAAG CTTCTCGTTG TATGGATTGT GGTGTACCTT TCTGTCACGA TGGTTGTCCG
ATTGGTAACA TTATTCCTGA GTTCAATGAT GCGGTTTACC GTGAAAGTTG GGTAGAAGCT
TGGGATATAT TAAGTGCAAC GAATAACTTT CCTGAAGTCA CCGGGCGTGT CTGCCCGGCG
CCTTGTGAGA CCTCCTGTGT TCTTGGTATT AACCAGGATC CTGTTACGAT TTGCAGCATA
GAAAAAACCA TTGCCGACAA AGCTTATGAA AATGGTTATG CTAAGCCTAA AATTCCAACA
TCACGCACTG GCAAAACGGT TGCAATCGTG GGCAGTGGAC CTGCTGGTTT AACTGCCGCT
GAGCAGCTAA ACGGTGCCGG TCATACGGTG ACTGTTTATG AACGTGACGA AAAAGTTGGC
GGTTTAATGC GTTTTGGTAT CCCAGACTTT AAGTTGGGTA TGGATGTTAT TGATCGTAAA
ATTGATGTGT TGGAAGCTGC TGGTATTAAG ATGGTGGTGA ATGCACACAT TGGCGTTGAT
TTTGATGCTA AAGAGTTGCG TAAGCAGTTT GATGTGGTGT TATTGACAGG TGGTTCAACG
GTGCCTCGTG ATTTACCTAT TCCAGGCCGA GATCTGAAAG GTGTCCATTT TGCGATGGAA
TTCCTTTCTC AAAATAACCG TCGTGCTAAC GGTATGGAGA TTAAAGGCGA AGAGATTCAC
GCCAAAGACG ATCATGTTGT TGTTATTGGC GGCGGCGATA CAGGTTCTGA CTGTGTTGGT
ACTTCTAATC GTCATCAAGC GGCAAGCATT ACGCAAGTGG AAATTATGCC GGTTCCGCCT
GAAAAACGTA CGGTTAATAT GCCTTGGCCT TCCTACCCAA TGATCTTAAA AACAACGAGT
TCACATCAGG AAGGTGCCGA TCGTCATTGG TCTATTCTTA CCAAAAAATT TATTGGTGAT
GAAAACGGCA ACGTTAAAGA GTTAGTTGTT GCTGATATCG AGTGGGAAAA AGCGGAACCC
GGTAAACGTC CTAATTTCAC CGAGATTGAA GGGACTGTTC GCAGCATTCC TTGTACTAAA
GCCTTTTTAG CAATGGGGTT CTTACACCCG GAGCCGACGG GTATTTTAGC GCAGCTTAAT
ATCGCCTTGG ATGAGCGTGG CAATGTTCAA ACAACTGATT ATGCCACTAG CCAACAAGGT
GTTTTTGCTT CTGGGGATAT GCGTACAGGG CAATCATTAG TTGTTCGCTG TATTAACGAA
GGTCGTGAAG CTTCCCGTGC AATTGATGCT TATTTGATGG GCACATCGAA CCTTGAAGCA
ATGGCCGACT CCTTAATGTT ATCTCATTAA
|
|---|
| Protein sequence | MGKPTGFLEL GRELPGRVPV IERIKNNKEF VKNDEFGDKV SDQASRCMDC GVPFCHDGCP
IGNIIPEFND AVYRESWVEA WDILSATNNF PEVTGRVCPA PCETSCVLGI NQDPVTICSI
EKTIADKAYE NGYAKPKIPT SRTGKTVAIV GSGPAGLTAA EQLNGAGHTV TVYERDEKVG
GLMRFGIPDF KLGMDVIDRK IDVLEAAGIK MVVNAHIGVD FDAKELRKQF DVVLLTGGST
VPRDLPIPGR DLKGVHFAME FLSQNNRRAN GMEIKGEEIH AKDDHVVVIG GGDTGSDCVG
TSNRHQAASI TQVEIMPVPP EKRTVNMPWP SYPMILKTTS SHQEGADRHW SILTKKFIGD
ENGNVKELVV ADIEWEKAEP GKRPNFTEIE GTVRSIPCTK AFLAMGFLHP EPTGILAQLN
IALDERGNVQ TTDYATSQQG VFASGDMRTG QSLVVRCINE GREASRAIDA YLMGTSNLEA
MADSLMLSH
|
|---|
| |