| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0589 |
|---|
| Symbol | |
|---|
| ID | 4624235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 770386 |
|---|
| End bp | 772050 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 639795790 |
|---|
| Product | cyclic-di-GMP regulatory protein |
|---|
| Protein accession | YP_942042 |
|---|
| Protein GI | 119944362 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATGA CACGATTTTT TGAATGGATT GAACAGTACC AACTTAAGAT CAAAATATTG
ATGATTCCGC TGCTGGCCAT TCTTATTGTT TCTGTCTACA TACTTGTTTA TATGACCGGC
GGTATTAAAT TCGTTTATTC ACATTCGATG TATGTTCCTA TCGTATTGTC AGGTTTGGTC
TTTGGTGCCA GAGGCGGTAT TTTAGTCGGT TTAATTAGCG GTTTGGTATT AGGACCCTTT
ATGCCAATCG ATGTCGTCAC CGGTGAACAG CAGAAGATGA TTAACTGGCT CTATCGTACT
GGATTCTTTA CCTTGATAGC ATTTATCAGT GGTATCGCAT GGGATGGTGT AAAAACCCAT
ATTATACAAC TTAACTGGAT TTTACAGCAT AATGCATCTA CCCGTCTGCC AAACCAATTG
GCGTTGCTCA AGAAAATTCC CCTGATTGTC AAAGAAAAAT CCTCACACTG TACTTTAATA
CTGGCTGTTA TTTCCTTGGA AAATTCAATG GAGTTGAAAA ATGCTTTTGG TTTAGGTGTT
ATTCAAGAAA TTATCCAACA ATTGGCCAAG CGTTTGAAAG ATATTGAAAT TAAAAATTAT
ACATATCAAA TAGAGACATC ACAGTTAGTG ATATTGGCAG TCGATAGCGC TCAAAAAAAT
GAGGCCATTT ATCACGAAAT AGCAGGAATA AGCCGTGAGC CGTTTACTTT CAATGAAATT
TTTATTCATG TTGATATACG AATGGGCATT AGCGAATTCA GCCAACTTGT GCAAGCGCCC
ATCATCTATC TGCAAGAGGC GGTACGAGCC TTGGCCGTGG CGCAAGAAAG AAAAATAGAC
AGAGTAACCT ACAGTGCTGA AATCAAGCTT CATGATACTG GCAATGTTGC TTTTTTAGGT
GAGTTGAAAA AAGCGATAGC AGAAGGAGAG CTGTCGATGC ATTATCAGCC GAAAATCGAT
ATTCCAACAG GGAATATCCA TAGCGTAGAA GCGCTGATGA GATGGAATCA TCCAGAAAAG
GGGAATATAC CTCCCTGTTT ATTTATTCCA CGCGCAGAGC AAAGTACATT GATTAATTTA
TTGACAGAGT TTGCTTTGGA TGAGGCGATT AAGCAAATCG TGCAGTGGAG GCAATACGAT
ATAAATATAC CCGTAGCCGT CAATATTTCG ATCAACGATC TGTTACACCC GGGATTTTAT
AATCTTATCG CAAATCTTCT CGATAAGTAC GGCGTAAGTG GAGAGTTTCT GGAATTGGAA
TTGACAGAAG GGGTAATGAT AATTGATATG GAGAAGTCGA ATGCTGAGTT GATGAAATTA
AAAAAACTGA ATATAAGTTT TTCTATCGAT GATTTCGGCA CAGGGTATTC ATCATTACAA
TATTTGCATC TGCTTCCCAT CTCTTTTATT AAAATAGATC AATCGTTTGT CCGCAGGTTA
CCGTCTGAAA GGCATGGTGT TTCCATTGTG GAAGCCACGG TGATGTTGGC CAATAAGATG
GGAATAAAAG CCATCGCTGA AGGCGTAGAA AACAAAGAAA GTTACGATTT TCTTGAAAAT
ATCGGCTGTG ATATAGCTCA GGGATATTTG ATCTCCCGTC CCTTGCCAGC AGATGATTTT
ACAAAATTCT ACCTGCAATG CGGTGGTAGA TATTTACCTG CGTGA
|
|---|
| Protein sequence | MNMTRFFEWI EQYQLKIKIL MIPLLAILIV SVYILVYMTG GIKFVYSHSM YVPIVLSGLV
FGARGGILVG LISGLVLGPF MPIDVVTGEQ QKMINWLYRT GFFTLIAFIS GIAWDGVKTH
IIQLNWILQH NASTRLPNQL ALLKKIPLIV KEKSSHCTLI LAVISLENSM ELKNAFGLGV
IQEIIQQLAK RLKDIEIKNY TYQIETSQLV ILAVDSAQKN EAIYHEIAGI SREPFTFNEI
FIHVDIRMGI SEFSQLVQAP IIYLQEAVRA LAVAQERKID RVTYSAEIKL HDTGNVAFLG
ELKKAIAEGE LSMHYQPKID IPTGNIHSVE ALMRWNHPEK GNIPPCLFIP RAEQSTLINL
LTEFALDEAI KQIVQWRQYD INIPVAVNIS INDLLHPGFY NLIANLLDKY GVSGEFLELE
LTEGVMIIDM EKSNAELMKL KKLNISFSID DFGTGYSSLQ YLHLLPISFI KIDQSFVRRL
PSERHGVSIV EATVMLANKM GIKAIAEGVE NKESYDFLEN IGCDIAQGYL ISRPLPADDF
TKFYLQCGGR YLPA
|
|---|
| |