| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0538 |
|---|
| Symbol | |
|---|
| ID | 4623725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 688039 |
|---|
| End bp | 689412 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639795734 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_941991 |
|---|
| Protein GI | 119944311 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATGT TAACCCTTTT TCTAATGGTG ATTGTATTCA TGACGGTCGG TGTGCCTATT
GCGGTTTCAC TGGGTCTGTC GAGTATGATC TTTTTATTAA TACATTCTGA TGCGTCGCTC
GCGTCAGTCG CACAAACACT GTTTAACGCG TTTGCCGGAC ATTATACTTT ATTGGCCATC
CCTTTCTTTG TATTAGCCTC CAGTTTTATG GCAACGGGTG GCGTCGCTAA GCGGATTATA
CGTTTTGCGA TCGCAATAGT GGGCTCACTG CGTGGTGGTC TGGCAATGGC CTCGGTGGTT
GCCTGTATGA TGTTTGCTGC CCTGTCGGGA TCGTCTCCGG CAACCGTTGT TGCAATTGGT
GGGATCGTTA TTGCCGGAAT GGTCAAAAAT GGTTACAGCA AAGATTTTGC AGCAGGTGTT
ATCTGTAATG CCGGCACCTT AGGGATTTTG ATTCCGCCCT CGATCGTGAT GGTGGTTTAT
GCGGCGGCGA CGGATGTGTC TGTCGGGCGA ATGTTCTTAG GTGGCGTTAT ACCCGGTTTG
CTCGCGGGTT TAATGCTGAT GATTGCTATC TATATTTATG CGCGGATTAA GAATATTCCG
GCTCAGCCTT TTGTTGGCTG GAAAGAGGTT TTTGATTCGG CTAAAGAGGC GGGTTGGGGA
TTACTGCTGA TTGTTATTAT TCTTGGCGGG ATTTATGGCG GTATCTTTAC ACCGACCGAG
GCCGCGGCTG TAGCGGCAGT TTATGCCTTT TTTATCTCTA ATTTTATCTA TAAAGATATG
GGGCCTTTAT CCGATAAAGA GCCTGAGGAG AAACGGGCTA AAGCATACTG GCGTAAAGCG
TCACATGTAT TTTTTCATGA AGATACCCGT AAAACCCTCT ATGAAGCGGG CAAATTAACG
ATTATGTTAA TGTTTATTGT TGCCAATGCT CTGATTTTAA AGCATGTTCT AACTGAAGAG
CAGATCCCGC AAATGATCAC CGCATCAATG CTCGATGCCG GTCTAGGCCC TATCACTTTC
CTTATTGTGG TTAATATCAT CTTATTAATC GGTGGCCAAT TTATGGAGCC CTCCGGCCTG
CTTATTATCG TTGCGCCTTT GGTCTTTCCA ATTGCAACAT CATTGGGCAT TGATCCTATT
CACCTTGGTA TTATGATGGT GGTGAATATG GAGATAGGCA TGATAACCCC ACCCGTAGGA
CTGAATCTGT TTGTGACCGC TGGTGTTGCA CAGATGTCGG TGATGAAGGT AGTGAAAGCC
TCGTTGCCGC TAGTGTGTGT TATGTTCGTC TTCTTGATGA TAGTCACTTA TGTACCCTGG
GTTTCAACCT GGTTACCCAC CCTGATGATG GGACCTGAGA TTATTACTCA CTAA
|
|---|
| Protein sequence | MAMLTLFLMV IVFMTVGVPI AVSLGLSSMI FLLIHSDASL ASVAQTLFNA FAGHYTLLAI
PFFVLASSFM ATGGVAKRII RFAIAIVGSL RGGLAMASVV ACMMFAALSG SSPATVVAIG
GIVIAGMVKN GYSKDFAAGV ICNAGTLGIL IPPSIVMVVY AAATDVSVGR MFLGGVIPGL
LAGLMLMIAI YIYARIKNIP AQPFVGWKEV FDSAKEAGWG LLLIVIILGG IYGGIFTPTE
AAAVAAVYAF FISNFIYKDM GPLSDKEPEE KRAKAYWRKA SHVFFHEDTR KTLYEAGKLT
IMLMFIVANA LILKHVLTEE QIPQMITASM LDAGLGPITF LIVVNIILLI GGQFMEPSGL
LIIVAPLVFP IATSLGIDPI HLGIMMVVNM EIGMITPPVG LNLFVTAGVA QMSVMKVVKA
SLPLVCVMFV FLMIVTYVPW VSTWLPTLMM GPEIITH
|
|---|
| |