| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0516 |
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| Symbol | |
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| ID | 4623442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | - |
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| Start bp | 657430 |
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| End bp | 660372 |
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| Gene Length | 2943 bp |
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| Protein Length | 980 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 639795713 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_941970 |
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| Protein GI | 119944290 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.579103 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTTAGCA GAATATTGTC ATCACTGTGT AAATACTTTA CATATATTCA CTCCAGTCAC
TCGCCATCAT TAGGTAAGGC CATTTTCTTT ACGGGCTTAA TGGCGGCTGG GCTTGTCACG
GCAATTTTGG TGCAACCCTT GATTGAAATT GGAGGCTGGC AAAACTACCT GCCATTACAC
ACTGCGCTTG AAACTATTTC CATTATTATC GCAGCATTAA TATTTGCCGT GGGCTGGACA
GGCAGAAAAC GCAAGTTACC CGGCAACATA GTCTTGCTTG CCTCTGTGTT TTTGGGGGTG
GGCATACTCG ATTTTTCTCA TATACTCTCC TACCCGGGCA TGCCTGATTA TGTAACGCCA
AGCAACCCTA ATAAAACCAT TGGATTTTGG CTTGCGGCAA GAATACTTTC GACCATCGGA
TTATTATTAT TCGTTATATT ACCAATTCGT CTATCGTCTT TTAGGTTTTT CCGCTATCTG
ATTTTGTCAA TCATACTGGC AGCAACGGGA ATTGTGCACT GGCTGATCCT AATGAATCCT
GACTTTCTTT CACATCTGTT CTTTACCCCG CAAGCGGGAC TTAGCGCTCT TAAAATCAAT
ACTGAGTATA TTATTATCGG TTTAACTTTA ATAACAGTAT TGCTACTGCT GCAGCAAATG
CACCGACCCC AAACCTATCA TGCATCATCC CTGCTCACAG GTCTGTGTAT TATAGCGATG
AGCGAGTTTT TCTTCACTCT ATACGCCGAT TTAACGGATA TTTACAATAT ATCGGGTCAT
CTCTATAAGG TTATTGCCTA CCTCTTTATT TACCGGGCAA TTTTTATTAC TGTCATCGAA
AGACCCTACC ACAATCTAGA GTTGGCAAAA ACTCAACTTC GCGAAAAAAA ACGCTTACTC
GACGACATTA TAGAGAATAT TCCAACGGCT ATTTTTCTGA AAGATGTTAA TAATTTACGG
CTTTCTCTTA TCAATAAATC CACTGAAAAG TTATTTGGAC ATAGTCGTGA AACTATTTTA
GGGCAAAGTG ATTATGACTT TTTCCCTAAA GAACAAGCAG ACTTTTTCAC CAATAAAGAT
CGCGAGACGA TAGAGCGAAG AACACTACTT GAAATCCCCG AGGAAATCAT AGATACCCCC
TTTGGATCCC GCACTCTATA CACAAAAAAA ATAATCATCA CCGATGAGCA CAATAATCCC
AAATTTCTGC TTGGCATTTC AGAAGATATT ACCGAACGCA ACGCCGCCAA AAAGGCGCTT
GAAGAAAGTG AACACTCCCT TAGAGAATCA CAGCGAATTG CACGTTTGGG AAGCTACCTT
TTCGATTTGC GCAGTAACCA ATGGTCCGGT TCTGAAATAT TAGATAATTT ACTTGGTATT
GATGCCGATT ACCAACGTAC TATGGAAGGT TGGGCGCAAT TAATTCATCC TGATGATCGC
AGTAGAATAG ATCATTATTT TAAAGAAGAT GTCCTTAATC AGAAAAAATC CTTTAATCAA
GAATATCGAA TGAAACGTCA AAATGATCAA GCTGTCCGTT GGGTACATGG CTTAGGTGAG
CTCGAGTTCG ATAATCAAGG AAGCCCTATC CTCATGAAAG GGACCATTCA GGATATTACC
GAACGAAAAC TTGCTGAAGC TCACCTGCAG GCTCTGGCAA ACTTTGATCA GCTTACCGGG
CTGCCGAACC GTTTTATGCT CAAGGATAAA ATCACCTACC TTTTTACGCT TGCAAGACGT
AATAATGAAT CCTTAACCAT GATGTTTCTA GACCTTGACC ATTTTAAAAA TGTCAATGAT
ACCTTAGGGC ATGTAATTGG TGATCGACTG CTGATCGAAA TAGCAAAGCG ACTAAAATCT
GCCATCCGGG AGGTCGACCT TGTATCAAGG ATTGGAAGCG ATGAGTTTAT TTTACTTTTC
CCTAATACCG ATGCAGACAG CGCATTAAAT ATTGCGACAA AACTGATTGA AACCGTGTCA
CTGCCTACTG TCTTTGAACA CCATGAACTG TTTATCACTG CCACAATAGG TATTGCTATC
TATCCGAATG ATGGCGAAGA GTTTGAAACC TTGATCAAAA ATGCCGATAC CGCCATGTCT
CAGGCAAAAA GATACAGCCG CAACACTTTC CATTTTTTCA CCGAAGAGAT GCAGGTTCAT
TTGCAACGTA AGTTAAAAAT AGTCAATGCC ATGAGACATG CTCTGCTGCG TAATGAAATG
CAAGTACACT ACCAACCACA GATTTCAGCA GTAAAGGGGC ATATTATAGG TGCTGAAGCG
CTGCTGCGCT GGAGACATCC GGAGCTGGGA GACATTTCTC CCGGTGAATT CATTCCCATT
GCAGAAAGCA GCGGACAGAT TGTAGCGATT GGAGAGTGGG TATTACGTAC CGCCATTGAT
CAAATGAAGG TCTGGCAAAA TGAAGGACTC GCGCCAATGG TTGTCGCTGT CAATCTGTCT
GCTCTGCAGT TTAAACAAGC CAACCTTATC GGCATGATTA TTAGCATGCT AAATAAAGCA
CAGCTCGCAC ATCAATACCT GGAATTGGAA CTCACCGAAG CCATTACTAT GGATGATCCG
CAGCAGGCGA TTAACATTAT GAATCAATTG CATGCAAAGG GCATTCGCAT GTCGATTGAT
GACTTTGGTA CAGGTTACTC TTCCCTGAGC TATCTCAAGC AGTTTAAGGT TTACAAACTT
AAAATCGACC AATCATTTAT TTGTAATCTT GCCAGGGATT CCGATGACCG AGCGATGGTG
CACGCCATTA TCGATATGGC GAAAAACCTC GGAATGCAGA CCATTGCCGA AGGGGTCGAG
ACAGCCGAAC AGCTGGAATT TCTACGCCTG CACGGCTGTA ATGAAATACA AGGTTATTAT
TTTAGTAAAG CTATTCCGGC TGACGAATTT TCCCGCTTTG CCAAGCAGGG CCCGCACCAC
TAA
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| Protein sequence | MFSRILSSLC KYFTYIHSSH SPSLGKAIFF TGLMAAGLVT AILVQPLIEI GGWQNYLPLH
TALETISIII AALIFAVGWT GRKRKLPGNI VLLASVFLGV GILDFSHILS YPGMPDYVTP
SNPNKTIGFW LAARILSTIG LLLFVILPIR LSSFRFFRYL ILSIILAATG IVHWLILMNP
DFLSHLFFTP QAGLSALKIN TEYIIIGLTL ITVLLLLQQM HRPQTYHASS LLTGLCIIAM
SEFFFTLYAD LTDIYNISGH LYKVIAYLFI YRAIFITVIE RPYHNLELAK TQLREKKRLL
DDIIENIPTA IFLKDVNNLR LSLINKSTEK LFGHSRETIL GQSDYDFFPK EQADFFTNKD
RETIERRTLL EIPEEIIDTP FGSRTLYTKK IIITDEHNNP KFLLGISEDI TERNAAKKAL
EESEHSLRES QRIARLGSYL FDLRSNQWSG SEILDNLLGI DADYQRTMEG WAQLIHPDDR
SRIDHYFKED VLNQKKSFNQ EYRMKRQNDQ AVRWVHGLGE LEFDNQGSPI LMKGTIQDIT
ERKLAEAHLQ ALANFDQLTG LPNRFMLKDK ITYLFTLARR NNESLTMMFL DLDHFKNVND
TLGHVIGDRL LIEIAKRLKS AIREVDLVSR IGSDEFILLF PNTDADSALN IATKLIETVS
LPTVFEHHEL FITATIGIAI YPNDGEEFET LIKNADTAMS QAKRYSRNTF HFFTEEMQVH
LQRKLKIVNA MRHALLRNEM QVHYQPQISA VKGHIIGAEA LLRWRHPELG DISPGEFIPI
AESSGQIVAI GEWVLRTAID QMKVWQNEGL APMVVAVNLS ALQFKQANLI GMIISMLNKA
QLAHQYLELE LTEAITMDDP QQAINIMNQL HAKGIRMSID DFGTGYSSLS YLKQFKVYKL
KIDQSFICNL ARDSDDRAMV HAIIDMAKNL GMQTIAEGVE TAEQLEFLRL HGCNEIQGYY
FSKAIPADEF SRFAKQGPHH
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