Gene Ping_0499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0499 
Symbol 
ID4623405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp633551 
End bp635125 
Gene Length1575 bp 
Protein Length524 aa 
Translation table11 
GC content41% 
IMG OID639795695 
Productlytic transglycosylase, catalytic 
Protein accessionYP_941953 
Protein GI119944273 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0979868 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTTT TTCTGTCGGT TTTTATTCTG TTTTTTGTTA CCGCCTGTAC TAGTACAGGT 
GAGTTGGCTG GGCCCGAACC CTCCAGAAAA AACATTGAAG AGCTACAACA AGAGATGTTC
AGTCGGTCTG CCGAATGGAG AACGGCACCT TTTATGGACG AAAAGTCCCT TCCCGAAAGT
TATGATAATC TTTGGTTAAA GTTAGCTGAA GGTTTTGAAT TTGAAGTGCC TCAAAACGCG
CGTGTCGCTA AACAACGGGA TTATTTTTTA AAGCATCCAA ATCACCTGGC GGAAGTTTCA
AAACGAGCAG AACCTTTTTT ATATCTGATT ATTGAACAAA TAGAAGCAAA AAACTTACCC
CTTGAACTTG CTTTATTACC TGTTGTAGAA AGTACTTTTA ATCCCTTTGC TTATTCGCAG
AGTCATGCTT CCGGTTTGTG GCAATTTATG CCGGCCACAG GGGTACGATT CGGATTAACT
CAAGACTGGT GGTACGACGG TCGTCGCGAC GTTTATGCTT CAACAGATGC AGCTTTAACC
TATATGGATA TATTACATAA CTATTTAAAT GAAGACTGGT TACATGCACT CGCGGCCTAT
AACTCTGGAG AAGGGCGGGT AGAAAGAGCG GTTCGCGCTA ATAAGAAATA CAATAAACCG
ACAGATTACT GGCATTTGTC CTTGCCAATA GAGACGCAAG AGTACGTCCC AAAGCTATTA
GCTTTAGTTG ATATTTTACG TAACCACAAA AAGTATGGTA TTGAGCTGCC AGTGATAGCA
AATAAGCAGG TACTGACTTA CGTAGATACC GGTTCGCAAC TAGATCTTGC TTATGCGGCA
GAATTGGCCG AGTTATCACC TGACGATCTT CAGTTATTAA ATCCCGCTTA TAATCGCTGG
GTAACTTCAC CAAACGGTCC TCACCGATTA CTTATCCCGA CAAAAATTGC ACAGCAGTTT
AGTCAAAAAT TGGCTAATAC GGCGCAAAAT AAGCGCACCA GATGGTCTCG TTATACTGTG
CAGTCAGGTG ATAACCTGGG GTTCATTGCG CGCGAAAATT ATACAACGAT AAATATTCTT
AAACAGGTTA ACAACCTTGA TAGTGCATTT ATAAAAATAG GACAGCCTTT ACTTATTCCG
TTTGCAAGTG AGGCCCAGAA GGATGATTTT TCTCGTCAGG CGAGGCGCTT TGAAGGTCAA
CAAGCCTCTG CAAACAAAAC AAAAAAGAAA GTTATCTACA CAGTAAGTGA AGCTGATACG
CTCTGGGATA TTAGTCGTGA CTTTAATGTG AGGGTTAAAG AGATTGCCAA ATGGAATACA
ATCAATAGTA CAGAACCGTT ACAGTTGGGG CAAAAATTAA CCGTTTGGAA AGCGATTAAA
TCCACACCCA ATAAAAACGA TACTCACCGT ATGACCTATC AGGTACGCGC CGGAGACTCT
CTTCACCTGA TTGCATCAAA ATTTAATGTA AAGCTCGTCG ATTTAGTGCG TTGGAATGAG
TTGAATAAAG GTGAATATAT TCAGCCGGGG CAAAAATTAG AACTCTATGT TGCAGTGCAA
AAATCTCGGA CTTAA
 
Protein sequence
MKFFLSVFIL FFVTACTSTG ELAGPEPSRK NIEELQQEMF SRSAEWRTAP FMDEKSLPES 
YDNLWLKLAE GFEFEVPQNA RVAKQRDYFL KHPNHLAEVS KRAEPFLYLI IEQIEAKNLP
LELALLPVVE STFNPFAYSQ SHASGLWQFM PATGVRFGLT QDWWYDGRRD VYASTDAALT
YMDILHNYLN EDWLHALAAY NSGEGRVERA VRANKKYNKP TDYWHLSLPI ETQEYVPKLL
ALVDILRNHK KYGIELPVIA NKQVLTYVDT GSQLDLAYAA ELAELSPDDL QLLNPAYNRW
VTSPNGPHRL LIPTKIAQQF SQKLANTAQN KRTRWSRYTV QSGDNLGFIA RENYTTINIL
KQVNNLDSAF IKIGQPLLIP FASEAQKDDF SRQARRFEGQ QASANKTKKK VIYTVSEADT
LWDISRDFNV RVKEIAKWNT INSTEPLQLG QKLTVWKAIK STPNKNDTHR MTYQVRAGDS
LHLIASKFNV KLVDLVRWNE LNKGEYIQPG QKLELYVAVQ KSRT