Gene Ping_0481 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0481 
SymbolpilC 
ID4626861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp609052 
End bp610284 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content43% 
IMG OID639795674 
Producttype II secretion system protein, type IV pilus biogenesis protein PilC 
Protein accessionYP_941937 
Protein GI119944257 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTAA AAAAGAAAAC TAAAGGACCA GTCATTGATA CTTTTAAATG GAAAGGCCTT 
AATCGTAAGG GCGCTGCAGT ATCAGGCGAA ATACAGGCTG AGAGTGTTGC AGAAGTTAAA
ATTGAACTGC GTAAGCAGAA GATTAATGTC ACTAAAATAC AGAAAAAATC CAAACCACTT
TTCTCCTTCG GTAATAAAAT AAAACCCATG GATATTGCGA TTATTTCTCG CCAGATAGCC
ACTATGCTCG GAGCAGGTGT ACCTTTAGTA CAAGGTTTAC AATTAATTGC CAAAAGCAGC
GAAAAACCGG CATCGCGAAA ATTAATGAGC ACAATTTCTC AAGAGGTGGC AACGGGCACA
CCACTTTCAC AAACCCTGCG TGGTCATTCC CTTTATTTTG ATGATTTATA CTGCGATCTT
GTTTATGCCG GTGAGCAGTC TGGTGCATTA GATACAATTT ACGACCGTAT CTCTATTTAT
AAAGAAAAAT CTGAAATTTT AAAATCAAAA ATTAAAAAAG CGATGTTTTA TCCAGCGGCG
GTACTAACGG TTGCCGGCCT GGTCACTCTG CTTTTACTGC TCTTTGTTAT TCCGCAGTTT
AAAGATATCT TTGAAGGTTT TGGCGCAGAG CTACCCGCTT TTACGCTGTT TGTACTGGGC
ATTTCCGACT TTGTACAGTC TTACTGGTAT ATGATAGTCG GAGTGGTAAT CGTTTTTCTC
TATCTGTTTA AAAAGGCGTA TCGCCGCTCG CAGAAAGTGC GTGACAATAC CGATAGATTT
GTTCTTAAGA TACCAGTGAT CAGTACCATT TTAGATAAAG CGGCGGTGGC ACGTTTTGCA
AGAACCCTTT CTACTACCTT TGCTGCCGGT ATTCCTTTGG TTGACGGGCT AGTTTCCGCT
GCGGGCGCTT CCGGAAATTA TATTTATCGC ACTGCGATTC TCAACGTGCG TGCGGAGGTA
ATTGCAGGCA TGCAGATGCA CATCGCCATG AAAACGACCA CTGTTTTCCC CGATATGATA
ACCCAGATGG TGATGATCGG TGAAGAGGCG GGTAATTTGG ATGGTATGTT AAGCAAGGTT
GCTGATATCT ATGAACAGCA GGTTGATGAT GCTGTTGATT CCTTAACCAG CCTGTTGGAG
CCGATGATCA TGGTGGTTTT AGGGGTAGTG GTCGGCGGTT TGATTGTGGC TATGTATTTA
CCGATCTTCG CGTTAGGTAC CGTTGTTGGT TAA
 
Protein sequence
MAVKKKTKGP VIDTFKWKGL NRKGAAVSGE IQAESVAEVK IELRKQKINV TKIQKKSKPL 
FSFGNKIKPM DIAIISRQIA TMLGAGVPLV QGLQLIAKSS EKPASRKLMS TISQEVATGT
PLSQTLRGHS LYFDDLYCDL VYAGEQSGAL DTIYDRISIY KEKSEILKSK IKKAMFYPAA
VLTVAGLVTL LLLLFVIPQF KDIFEGFGAE LPAFTLFVLG ISDFVQSYWY MIVGVVIVFL
YLFKKAYRRS QKVRDNTDRF VLKIPVISTI LDKAAVARFA RTLSTTFAAG IPLVDGLVSA
AGASGNYIYR TAILNVRAEV IAGMQMHIAM KTTTVFPDMI TQMVMIGEEA GNLDGMLSKV
ADIYEQQVDD AVDSLTSLLE PMIMVVLGVV VGGLIVAMYL PIFALGTVVG