| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0473 |
|---|
| Symbol | |
|---|
| ID | 4626750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 596591 |
|---|
| End bp | 599692 |
|---|
| Gene Length | 3102 bp |
|---|
| Protein Length | 1033 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639795666 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_941929 |
|---|
| Protein GI | 119944249 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.239628 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.228728 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCTTT CTGATACTGC GGTTAAACGT CCGGTTATGG CGATTGTATT AAGTTTATTA
CTCTGTGTAT TTGGATCGCT CTCTTTTAGT AAACTTTCCA TCAGGGAGAT GCCTGATGTG
GAAAGCCCGG TTGTAACTGT GATGACCCGT TATGAGGGAG CAGCCGCCAC TATTATGGAA
AGCCAGGTGA CCTCGGTGAT TGAAAACCAG ATTACAGGTA TAAGTGGTAT TGAGGATCTC
CGGTCGGTAA CACGTAACGG CATGTCGCGT ATTTCGATCA CCTTTGCATT AGACTGGAAC
CTTACCGAAG GGGTGAGTGA TGTTCGTGAT GCAGTAGAAA AAGCAAAACG TTTTCTACCG
GATGAAGCGA CTGATCCGAT CGTCTCTAAA AATAATGGCA GCGGTGAAGC TGCTATGTAT
GTCAATATTA ATTCCACGAC AATGGACAGA ACGCAGTTAA CGGATTATGT CAAGCGGGTA
TTAGAAGATC GCTTTAGCCT GATCAGCGGA GTAAGCTCTA TAACACTTTC CGGTGGTTTA
AATCAGGTGA TGTACGTCAA GCTGGATCCG GCGCTGATGG CAGGGCGGGG AGTAACAAGC
AGTGATATTG TCGACGCACT TAAGCGGGAA AATATGGAAA GCCCGGCGGG TGAAGTGCGC
AATGATACCA CTGTGATGTC TGTCCGTACC GCGCGTTTGT ATCAGGAGCC GCAGGATTTT
GACTACTTAG TGGTGCGCAC TGCGAACGAT GGTTCAGCTG TCTATTTAAA AGAGGTCGCA
GAGGTTTATA TCGGTGCAGA AAATGAAAGT TCCTCTTTTA AAAACAATGG TATTGTTAAT
ATCAGTTTGG GGATTATTCC TCAGTCAGAT GTTAATCCCT TAGCCGTTGC TCAGGCGGTC
TATCGGGAGG TCGATAAGAT ACAACCATTT TTACCTGAAG GGGCCCGTTT AGCTGTTAAT
TATGATGCCA CTGTATTTGT CGACCGCTCT ATCTCCGAAG TTTATTACAC CCTGTTTATT
ACCGCTGCGC TGGTTATTTT GGTGCTCTAT ATTTTTATCG GTCAAGTAAG GGCAACGCTG
ATTCCCGCTA TTACCGTTCC TGTTTCTTTG ATTTCCTCCT TTATCGCCGC TTATTATTTT
GGCTTCTCGA TTAACTTAAT TACCCTGATG GCAATGATCT TAGCCATTGG TTTAGTGGTT
GATGACGCGA TAGTAGTAGT GGAGAATATC TTCCACCATA TTGAGAAGGG TGAACCCCCT
TTATTAGCTG CCTTTAAAGG CACGCGGGAG GTGGGATTTG CAGTGGTGGC AACGACCTTG
GTATTAGTCA TGGTTTTTTT ACCCATTTCA TTTATGGGCG GAATGGTGGG GTTATTATTT
ACCGAGTTCG CGGTTTTACT CGCCATGGCA GTGATTTTCT CCTCGATTGT GGCATTAACC
CTGACCCCGG TTCTGGCGAG TAAAATATTA ACCTCAAAGA CAAAAGCGAA TCGTTTTAAT
CGTTTAACGG AGCGGCTCTT TGAAAGTATG GAAGCGCGCT ATCGCAAAAT AGTATTTACC
ACCATGCAGT TTAGATACGC GGCTCCATTG GTCATTCTGG CCTGTGTCGG CGGGAGCTTT
TTTCTGTTTC AACAAGTCCC TGCGCAACTC ACGCCTAGTG AAGATCGCGG GGTTCTTTTT
GCCTTTATAA AAGGGGCTGA GGGAACCAGC TATAACCGCA TGACAACCAA TATGGATATT
GTCGAAGCAC GACTTTTACC TCTGTTAGGC AAAGGGGTGA TTAAATCTTT TAGCACCCAA
GCACCAGCCT ATGGTGGTAA TGCCGGTGAT CAGACCGGCT TTGTGATTAT GATCCTGGAA
GATTGGCAGG AGCGTGATAA AACGGCGCAA CAGGCACTCG CGATAGTCAG CAACGCTTTA
AAAGAGATTC CGGATGTTAG GGTGCGCGCA ATGATGCCTG GTTTTAGAGG CCGCTCAAGC
AGTGCGGTGC AGTTTGTACT GGGCGGTTCA GATTATCAGG AGCTGCAAAA ATGGGCCGAG
CTATTACAAC AACAAGCCGA TCAAAGCGGT ATTATCGTTG GAGCAGATCT TGATTATTCA
CAAAAAACAC CGGAGCTGCT GGTAAGTCTG GACAAACAGA GGGCGGCAGA ACTTGGGATC
AGTGTGACCG AGGTCGCTGA TACCTTAGAA ATCATGCTCG GTGGACGCGG TGCGACCACT
TACATTGATC GCGGTGAAGA GTATGATGTT TATCTGCGTG GTGACGAAAA CAGTTTCAAT
AATGCCAGCG ATCTCAGTCA AATTTACATG CGCAGCACCA AAGGAGATTT GCTCAGCCTG
GATACGATAA GCACTGTCGA GGAAATTGCC TCAGCAAGCC GCCTTTCCCA TTATAATAAA
CAAAAATCCA TTACCCTGAG CGGTAATCTC GCTGCCGGCC ACACGCTTGG GGAGGCCTTA
GATTTTTTAG ATGCTAAGGC GATAACCTTA TTACCCAGTG ATATTTCTAT TTCTTACAGC
GGAGAATCAA AGGATTATAA AGAAAATAAA AGCAGTATTC TGCTGGTATT TGCACTGGCA
TTGTTAGTCG CTTATCTGGT GCTTGCTGCG CAGTTTGAAA GTTTTATTAA TCCGCTGGTG
GTCATGTTTA CTGTGCCGAT GGGGGTATTA GGTGGGTTCT TAGGCTTGTA TTTTATGGAT
CAGGGACTCA ATGTTTACAG TCAAATCGGG ATGATTATGC TGATTGGCAT GGTTACTAAA
AACGGTATCT TAATTGTCGA ATTTGCAAAT CAGCTGCGTG ATCGCGGTAT TGAGTTTGAA
CAGGCTATTA TTGATGCGTC CGCACGCCGC CTTCGGCCTA TCTTAATGAC CGCTTTTACG
ACACTAGCAG GATCCGTACC GTTAATTTTA TCAACGGGTG CCGGATCAGA AAGCCGGATC
GCAGTCGGCA CTGTGGTTTT CTTTGGCATG GCATTTGCGA CGTTAGTCAC CCTGATTATT
ATTCCTGCGA TGTACCGTTT AATTTGTGTC ACAACCCATT CTCCAGGTTA TGTAGCAGAT
TTATTGAACG ATGCAATAAG CAGGGACAGT CAAAGGAAAT AA
|
|---|
| Protein sequence | MWLSDTAVKR PVMAIVLSLL LCVFGSLSFS KLSIREMPDV ESPVVTVMTR YEGAAATIME
SQVTSVIENQ ITGISGIEDL RSVTRNGMSR ISITFALDWN LTEGVSDVRD AVEKAKRFLP
DEATDPIVSK NNGSGEAAMY VNINSTTMDR TQLTDYVKRV LEDRFSLISG VSSITLSGGL
NQVMYVKLDP ALMAGRGVTS SDIVDALKRE NMESPAGEVR NDTTVMSVRT ARLYQEPQDF
DYLVVRTAND GSAVYLKEVA EVYIGAENES SSFKNNGIVN ISLGIIPQSD VNPLAVAQAV
YREVDKIQPF LPEGARLAVN YDATVFVDRS ISEVYYTLFI TAALVILVLY IFIGQVRATL
IPAITVPVSL ISSFIAAYYF GFSINLITLM AMILAIGLVV DDAIVVVENI FHHIEKGEPP
LLAAFKGTRE VGFAVVATTL VLVMVFLPIS FMGGMVGLLF TEFAVLLAMA VIFSSIVALT
LTPVLASKIL TSKTKANRFN RLTERLFESM EARYRKIVFT TMQFRYAAPL VILACVGGSF
FLFQQVPAQL TPSEDRGVLF AFIKGAEGTS YNRMTTNMDI VEARLLPLLG KGVIKSFSTQ
APAYGGNAGD QTGFVIMILE DWQERDKTAQ QALAIVSNAL KEIPDVRVRA MMPGFRGRSS
SAVQFVLGGS DYQELQKWAE LLQQQADQSG IIVGADLDYS QKTPELLVSL DKQRAAELGI
SVTEVADTLE IMLGGRGATT YIDRGEEYDV YLRGDENSFN NASDLSQIYM RSTKGDLLSL
DTISTVEEIA SASRLSHYNK QKSITLSGNL AAGHTLGEAL DFLDAKAITL LPSDISISYS
GESKDYKENK SSILLVFALA LLVAYLVLAA QFESFINPLV VMFTVPMGVL GGFLGLYFMD
QGLNVYSQIG MIMLIGMVTK NGILIVEFAN QLRDRGIEFE QAIIDASARR LRPILMTAFT
TLAGSVPLIL STGAGSESRI AVGTVVFFGM AFATLVTLII IPAMYRLICV TTHSPGYVAD
LLNDAISRDS QRK
|
|---|
| |