Gene Ping_0305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0305 
Symbol 
ID4624882 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp401986 
End bp403926 
Gene Length1941 bp 
Protein Length646 aa 
Translation table11 
GC content40% 
IMG OID639795502 
Productalpha amylase, catalytic region 
Protein accessionYP_941770 
Protein GI119944090 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGAA TAAATATGGA TTTAACCTTT GAAAGCCAGC GTACTTTAAA GCGCATTCTA 
GAACTTATTG ATTTATCTAA ACTGACAAAA GATGATTTAG ACATTTTTTT AGCACGATTA
GACAAAAATT TCCCTGCGTT ATTTGCCAAG CTATATCACT TATACGGTGA TAAATATGAT
TTCTTTTATC ATCTTCAACA ACTGGTGGCC CATCTGGCAG CAGGGATTAT CGCACGCTCG
GGGAAACTTA AGAAACAAGA TACACTGCGT CTTAATAAGC CTGATTGGTA CCGTGATCAC
AAAATGCTCG GCATGGCCGC TTACGTAGAT CTGTTTGCCG GTGATTTAAA GAAATTAAAA
GCGAAAATTC CCTACCTTAA ATCTTTAGGT ATTAATTATT TACACTTGAT GCCGTTATAT
AAATCCCCTA AAGGCGACAG CGATGGCGGT TATGCTGTTT CAGACTATCG TGAGGTTGAT
CCTAAACTTG GCACAGAAAA AGATCTGCTC GCCCTTTCCG ATGCATTATC AGCTGAGGGG
ATAAGTTTAG TATTGGATTT TGTGTTTAAT CATACTTCCG ATGAACACCC ATGGGCAGAG
GCCGCCAAGG TCGGCGCTGA AGAATTTACT GATTTTTATT ACTTTTTTGA AAAGAAACAA
GAGATTGATG ACTATAACCA AACCTGCCGG GAAATATTCC CGACCGTGCG TCGCGGCAGT
TTTACCTATT TAGAAGCACA AAAAAAATGG GTATGGACCA CTTTTAATAG TTTTCAATGG
GATCTTAACT ACTCAAATCC TGCAGTTTTT AATGCGATTA CCGATGAAAT GTTGTTTCTG
GCAAACCTTG GTTGTGAAGG ACTCCGTTTG GATGCATTGG CTTTTATCTG GAAAGAAAAA
TGGACACAAT GTGAGAATTT ACCTAAAGCA CATACGCTTA TTCAAGCTTT TAATTTATGT
TTACAAATTG TTGCACCTGC TGTTGTTTTT AAATCTGAAG CCATTGTTCA TCCCGATGAA
GTGGCAAAGT ATATTGGTAA AGATGAGTGT CAGTTATCCT ATAACCCGTT AATGATGGCC
TTAATGTGGG AAAGTCTGGC AACCCGGGAA ACTAAGTTAT TGACCGCGTC ATTGAAAAAA
AGCTTTGCTA TCTCGCCACA ATGCAGCTGG GTTAATTATA TTCGTTGTCA TGACGATATT
GGCTGGACCT TTGATGATTC TCTTGCGCAG CAATTGGGCA TTAATGGCTT TGACCACCGC
CGTTTTCTTA ATAATTTTTA TACCGGGCGT TTTGAAGGAT CTTTTGCACA GGGTGTGCCA
TTTCAAGAAA ACCCCGCCAC TGGAGATTGC CGAGTCTGTG GATCACTGGC TTCATTAACT
GGATTGGAAA AAGGGCTTGA ACAAAATAAT CAGCGCGATA TTGATTTTGC ATTAAAGAGG
ATCAGCCTGC TTAATAGTAT TAATATGAGC ATCGGTGGTA TTCCTCTTAT TTATCAAGGG
GATGAATTGG GTATGTTGAA TGATTACAGT TACCTTGACG ATCACAGCAA AAAAGAGGAT
TCGCGTTGGG TTAATCGCCC GGTAATTACC GAAGAGGATA CTAAATTAGC AGAAAAAGCG
GGCTCAGCAC AATTTTTCGT TAAGCAATCT TTGCAGGCGA TGATAAATAT TCGCCAGCAG
CATCAAGTAT TCGGCATCGC GGAAACTAAG ATTCTTGAAA CTTATAATCC TCATCTGTTT
GCTTATTGCC GAATTCATGA AAGTGGCCAG AAAATGTTGG CTATCTGTAA TTTCAGTGAA
GAAAGCCAAT CAGTTAACTC TTCCATTACC GACATTTTGG CTTCTAATAA GATGGTGGAT
TTACTCACTG CGACTAAGGT TAAGAAAACC GCAGTGCTTG AGCTAGGCGC TTATCAGGTA
CTTTGGTTAG TGGCAGAATA G
 
Protein sequence
MSRINMDLTF ESQRTLKRIL ELIDLSKLTK DDLDIFLARL DKNFPALFAK LYHLYGDKYD 
FFYHLQQLVA HLAAGIIARS GKLKKQDTLR LNKPDWYRDH KMLGMAAYVD LFAGDLKKLK
AKIPYLKSLG INYLHLMPLY KSPKGDSDGG YAVSDYREVD PKLGTEKDLL ALSDALSAEG
ISLVLDFVFN HTSDEHPWAE AAKVGAEEFT DFYYFFEKKQ EIDDYNQTCR EIFPTVRRGS
FTYLEAQKKW VWTTFNSFQW DLNYSNPAVF NAITDEMLFL ANLGCEGLRL DALAFIWKEK
WTQCENLPKA HTLIQAFNLC LQIVAPAVVF KSEAIVHPDE VAKYIGKDEC QLSYNPLMMA
LMWESLATRE TKLLTASLKK SFAISPQCSW VNYIRCHDDI GWTFDDSLAQ QLGINGFDHR
RFLNNFYTGR FEGSFAQGVP FQENPATGDC RVCGSLASLT GLEKGLEQNN QRDIDFALKR
ISLLNSINMS IGGIPLIYQG DELGMLNDYS YLDDHSKKED SRWVNRPVIT EEDTKLAEKA
GSAQFFVKQS LQAMINIRQQ HQVFGIAETK ILETYNPHLF AYCRIHESGQ KMLAICNFSE
ESQSVNSSIT DILASNKMVD LLTATKVKKT AVLELGAYQV LWLVAE