Gene Ping_0300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0300 
Symbol 
ID4623719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp391237 
End bp395031 
Gene Length3795 bp 
Protein Length1264 aa 
Translation table11 
GC content45% 
IMG OID639795497 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_941765 
Protein GI119944085 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGTTTG ATGGTAACTT AGTCGCCGAT TCTACTATTC GTCAAAAAAT TCGAGATTTT 
CATCGTATCG ATGAAAACTT GGCTGTTGAT CATATTTTGC CTGAGGCAGA AGTTAATATG
CGAGCACGTA GCCGTGCCTG GGAGCGAGCG CGCAAAATGG TGCTGCAAAT ACGCCGTGAA
CAGGAAGGTA CTGGCGTTGT TGAAGCATTA CTCAATGAGT ATTCTCTTTC TTCGGCTGAA
GGTGTGGTGC TAATGTGCCT AGCGGAAGCA TTATTACGGG TACCTGACAA AAAAACTCAG
GATGAGCTGA TCCGCGATAA GCTTTCAAAG GGAAAATGGA GTACGCATTT AGGTACCAGT
AATTCACTCT TTGTGAATGC ATCATCCTGG GGCCTGCTGT TAACCGGCAG CATGGTTAAC
TTCAGCGATA CTCGCAAAAG CAATCAGTTT GGTTTATTGA AAAAAACCCT TGGCCGAATG
GGTGAACCAG TTATTCGTAA AGCCATGAAT ATTGCGATGA AAGTCATGGG AGAGCAGTTC
GTAATAGGTG AAACTATTGT TGCTGCGGTC AAGCGTGCGG AACAAAAAGA ACGTAATGGT
TATGTCTATT CTTACGATGT GCTGGGTGAA GGCGCAAGAA CTGAAAAAGA TGCGGAGCGT
TATTTTCAAT CCTATGTTAA GGCACTCGTT GTTATTGGTG AAGCCGCTAA AGGCAGAGGC
CCTCGAAAAA GCCCTGGGAT CTCAGTTAAA TTGTCAGCGA TTCATCCCCG CTACGAGTTT
AGTCACAGAG ACAGAGTGCT TAAGGAACTC CCGCAAAAAC TAAAATCCTT ATGTTTACTG
GCAAAAAAAT ATGATATTGG TTTAACGGTC GATGCTGAAG AATCTGAGCG TCTGGATATC
TCTCTTGATA TTATTGAAAT AGTATTTAGC GATCCTGAGT TAAGTGATTG GGATGGTTTC
GGTTTGGCGG TTCAAGCTTA TCAGAAGCGG GCTATTTTTG TGATCGACTG GTTGCGCGAG
CTAACCGAGA AAGTGGGTCG TAAAATGATG GTACGACTGG TCAAAGGAGC TTATTGGGAT
ACTGAGATAA AAAATGCGCA AAAAGACGGG CTTGAGCATT ATCCTGTCTT CACCCGTAAG
TCTTCCACCG ATGTGTCTTA TCATGCCTGT GCTAATCGCC TGTTAGACTA TCGCGATACT
ATCTATCCTC AATTTGCAAC GCATAATGCT TATACCGCAT CGGTCATTAT TGAGCTTGCC
GGTGATGATA AAGAAGGCTT TGAATTCCAA TGTTTACATG GCATGGGAGA CAGTTTGTAT
GATCAAATTG TGACCACTGA TAATATTCAA TGTCGAATTT ACGCACCCGT TGGTCAGCAT
GAAGATCTGC TCGCTTATCT GGTACGTCGT CTGCTGGAAA ATGGTGCTAA TTCTTCTTTT
GTTAATGCCA TCGTTGATGA AACCCGTCCA GTTGAATCTT TGCTTGAAGA TCCTGTCGAA
AAAACCCAGC GACTTAAAGT TACCTACAAT GAGCAGATAC TTAAACCGAT CGATTTATTT
GGTAAGGAAA GAGATAATTC CAAAGGGCTT GACCTTAACG ATATCAATCA GATAACGCCA
TTAAGAGAAT CGCTCGATCG TTGGTTCAAT GATCACTTGC TCACATCAGA CCAAGTGCCT
GATGATTGTT TTGCGGTAAA AAATCCGGCT GACCATAATG AAATAATTGG CTTCCATCGT
CATGACAGCC GAGAGGAAAT GGTAGCTAAG CTTGAAAAAG CTCACAACAG TTTCGCGACT
TGGTCACAAA CTCCGATTGA GGAGAGAGCT AGTTTACTAA GACGAACCGC TGATATTTTA
GAACGTCACA TGGACGAACT CATTGCGATT TGTATTAAAG AAGCAGGAAA AATTGCTCAG
GACGGCATTG ATGAAGTCCG TGAGGCAGTC GATTTTTGTC GTTATTACGC GGCTAGAGCC
GAAGAACTTG CCGAAGATGA CAGACTAGAG CCGCGCGGTG TGGTTTTATG TATCAGCCCA
TGGAACTTTC CGCTGGCGAT ATTTATGGGT CAGGTTGCGG CAGCAATTGT AACGGGTAAC
ACAGTAATAG CTAAACCCGC TGAACAAACC AGCCTGATAG CTTTACGCGC TCTCGAATTA
ATGGAGTCTG TGGGCATGCC CGAGGGCACA GTGACAGCCG TTATTGCTAG AGGTCCTGCC
GTTGGTGAAG CGCTGCTTGA AGATGAGCGA ATTAAGGCGG TAGTATTTAC CGGCTCAACA
ACGACTGGAA CACATATTTC CCGCATTCTG GCAAACCGGG GTGGAGATCA AATACCGCTG
ATCGCAGAGA CTGGGGGCCA GAACTGTATG GTGGTCGACT CAACCGCCTT GCCTGAGCAA
GTCATTGATG ATGTCATTTC ATCGGGCTTC CAAAGTGCAG GACAACGCTG TTCAGCTCTG
CGCGTCTTAT TTTTACAGGA AGAAATTGCC GATGGTATGA CCGAGATGTT GATCGGTGCG
CTAAAGGAAC TTCATATTGG TGACCCTGCT CAACTATCAA CAGACGTTGG ACCGGTGATT
GACAGCAAAG CATTAAATAG CCTGGAAGCT CATGTTAAAG ATATGGAGAA TAAAGCTGAA
CTGCTTTATG AATGTCCGGT ACCTGAAAAT AACGGCACAT TTTTTGCCCC ACGTCTTTAC
CAGATAGCAG ACATCTCGGT ATTAGAACGC GAAGTTTTTG GTCCTTGCGT GCATATCGTC
CGGTTTAAGG GCGACCAACT TGCAAATACC ATCGAAAAAA TCAATGCCAC TGGATTTGGA
TTAACCATGG GTATTCATAC TCGCATTGAA GAGCGCGCCA TTGAACTCGC TAAGTTGTCG
CGCGCAGGGA ATGTCTACAT CAATCGTAAT ATGATAGGTG CGGTGGTTGG AGTACAACCC
TTTGGTGGAA CAGGTTTATC CGGTACAGGT CCAAAAGCAG GCGGACCTAA TTATCTTTCT
CGCTTTATGA ATGAAAAGGC AACGCCAGCA CCACATCAGG ATGATAGTGT ATTGGGTGAC
GACAAAGCGC TGATCAGTGA TAAGGTATCA AATCTGGAAA CGCTTGCCTT TATGAAAAAT
GCTATCAAAG TAGAGCCTGA ATGGCGGGTA ACTAATTTAA ATGATCGTAT TTCTGCAGTG
CGTCAGCTTC TTGCCCAAAT TGCGAAGGTG ACCATTGTTG AAGAATTAGC CGATGATTTT
AATTCAACAC TCGCGGCAGC AAGATCGCAG CTGATAAGCA TTGAAAAAAA GATGAGAAGA
CCAAAGGCAC TGCCTGGGCC TACCGGTGAA TCTAACGTAT TGTACTTAGA GCCTCGCGGT
ATTCTGGTAT GTTTTGCGGA TAAAAATGTA ACTTTCGAAT ATTGGACCTT AGCAATAGTA
ACTGCATTAG CCACCGGTAA TACGGTTATT TCGGTGGTTT CTGACTTGTT TTATGAGGAA
GCATTGGCAT TCAGAGATAA ATTTAACGCG ACGGGTGCTC CTGAAGGAGT GCTTCAAGTA
GCTAAATTAT GTCATTTAGA AGCCTTACTG GAGCAGGATA AATTGGCGGG TGTGGTCATT
GACAGTCACA GTCCACGTCG TACCTTTATG GTGCGTAAAT TGGCCGAACG TGAAGGTGCA
ATACTGCCGG TAATAACCTC AGAATACACT GATCACTTGA TTCAACGACT ACTCACTGAA
AAGAGCATCA GTATAGATAT CACTGCATCA GGCGGTAATA CCTCTCTGAT GACCTTGGTT
GAAGAGGAAG ACTAG
 
Protein sequence
MLFDGNLVAD STIRQKIRDF HRIDENLAVD HILPEAEVNM RARSRAWERA RKMVLQIRRE 
QEGTGVVEAL LNEYSLSSAE GVVLMCLAEA LLRVPDKKTQ DELIRDKLSK GKWSTHLGTS
NSLFVNASSW GLLLTGSMVN FSDTRKSNQF GLLKKTLGRM GEPVIRKAMN IAMKVMGEQF
VIGETIVAAV KRAEQKERNG YVYSYDVLGE GARTEKDAER YFQSYVKALV VIGEAAKGRG
PRKSPGISVK LSAIHPRYEF SHRDRVLKEL PQKLKSLCLL AKKYDIGLTV DAEESERLDI
SLDIIEIVFS DPELSDWDGF GLAVQAYQKR AIFVIDWLRE LTEKVGRKMM VRLVKGAYWD
TEIKNAQKDG LEHYPVFTRK SSTDVSYHAC ANRLLDYRDT IYPQFATHNA YTASVIIELA
GDDKEGFEFQ CLHGMGDSLY DQIVTTDNIQ CRIYAPVGQH EDLLAYLVRR LLENGANSSF
VNAIVDETRP VESLLEDPVE KTQRLKVTYN EQILKPIDLF GKERDNSKGL DLNDINQITP
LRESLDRWFN DHLLTSDQVP DDCFAVKNPA DHNEIIGFHR HDSREEMVAK LEKAHNSFAT
WSQTPIEERA SLLRRTADIL ERHMDELIAI CIKEAGKIAQ DGIDEVREAV DFCRYYAARA
EELAEDDRLE PRGVVLCISP WNFPLAIFMG QVAAAIVTGN TVIAKPAEQT SLIALRALEL
MESVGMPEGT VTAVIARGPA VGEALLEDER IKAVVFTGST TTGTHISRIL ANRGGDQIPL
IAETGGQNCM VVDSTALPEQ VIDDVISSGF QSAGQRCSAL RVLFLQEEIA DGMTEMLIGA
LKELHIGDPA QLSTDVGPVI DSKALNSLEA HVKDMENKAE LLYECPVPEN NGTFFAPRLY
QIADISVLER EVFGPCVHIV RFKGDQLANT IEKINATGFG LTMGIHTRIE ERAIELAKLS
RAGNVYINRN MIGAVVGVQP FGGTGLSGTG PKAGGPNYLS RFMNEKATPA PHQDDSVLGD
DKALISDKVS NLETLAFMKN AIKVEPEWRV TNLNDRISAV RQLLAQIAKV TIVEELADDF
NSTLAAARSQ LISIEKKMRR PKALPGPTGE SNVLYLEPRG ILVCFADKNV TFEYWTLAIV
TALATGNTVI SVVSDLFYEE ALAFRDKFNA TGAPEGVLQV AKLCHLEALL EQDKLAGVVI
DSHSPRRTFM VRKLAEREGA ILPVITSEYT DHLIQRLLTE KSISIDITAS GGNTSLMTLV
EEED