Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_0162 |
Symbol | |
ID | 4626292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 211679 |
End bp | 213748 |
Gene Length | 2070 bp |
Protein Length | 689 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 639795352 |
Product | type IV pilus secretin PilQ |
Protein accession | YP_941629 |
Protein GI | 119943949 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACAT CATATTTAAA AACATTATTT AATATTTTTC CGCTGGTATT CTTGCTTTAT TCCCCTATTG GATCGGCTGA ATCACAACTT GGTAAGCTCG ATATTAATCC TCTAGTGGAC GGTAAATTTG AATTGAGGTT TGGATTCAAC GAATCTATTA GTGGCTACCA AGATAAATTA TATTATCGCC CGAACAAGTT AGTTATTGAT ATTAAAGACG CGAGTTCCGT TTTAGCGCTA AACCCGATTA AAATTGAAAA AGGGGGGATT AATAATGTTG CAACCAAGAG GACAGAAGAG GGGTTGCGTT TAACTATTAC CCTTGACACT TTAATGCCCT ATCGTGTTGT ACAGGAAAAT AGTCTTCTTT TTGTGCGTTT TGGTCATACC GGGGCTGATA TCGCCGGGAG CGATAAACAG GAGCTTGCTC TGGCGTCCGC AGTTGTGCAA AATTCTGGCA GCCAAACAAC AAAAACTGCA ACGGAAAAGG TTAATGCATC AGCTCTATCC TCCAATCAGA CAACCCCTAA GGGTTACGTT AACAGTATTC ATTCACTTGA CTTTAAGCGT GGCTTAGAGG GACAAGGCAA ATTATTAGTG TACCTTGATA ACTCCAGTAT AGCTGTCGAC ATTCGTCGTC GTAATAATCA GTTGATCGCT GAATTTCAGA GTACTTATAT ACCCGACGAA TTATTATATA TTATGGACGT TGTTGATTTT GCGACTGCAG TAGAAAAAGT GGAAACCTTT AAAGAAGATG GGAAAACGCG CCTTATTTTT GATATTAAAG ATCAATACAA CTATCGTTAT GACCAGTTAG ATACCCTGTT TATGATTGAA ATCTCTGAAA AACTTCAAGA TCAAAAAGAA AGTGCCTATC AGGGAAAAGC CATCTCTTTA AACTTTCAGG ATATCCCGGT GCGCACTGTG TTGCAGTTGA TAGCGGATTT TAATGGTTTT AATTTAGTCA TTACTGATTC CGTCAGTGGG AATATAACCT TGCGGCTTGA TGATGTGCCC TGGGAACAGG CCCTGGACAT TATTTTAAAA GTTAAAGGAC TTGGCAAGAG TCTGGACGGT AACGTATTAA TGATTGCTCC TGCTGTCGAG TTAGCCGCAA AAAAACGCGA GCAGTTAGAA TCAGAAAATG CTGTGGCTAA TTTAGCGCCT CTGTATTCTG AATTTATCCA AGTCAATTAT GCTAAAGTAG CTGATATCTC TGCTATGTTA TCGAGTGATA AAACCAGCTT ATTGTCTGAA CGTGGTGCTG TTAGTGTTGA TAACCGTACT AATACCTTGT TAGTAAAAGA TACTGCAGCT GTGATTGATG CGGTGAAAAA GATGATTCAA ATATTGGATA TACCGGTTCG CCAGGTGGTG ATAGAAGCGC GTATGGTCAC TGTTGATGAC TCGGTGAGTG AAGAGTTAGG TGTCAAATGG GGTATGACGT CAACAAGTAG TAGTACGGTT GATAGTTTAA ATGTTAATCT TCCTGCTACC GATGCTGCTG GTACTATTGC CTTTAAGCTC GCGAAATTTT CTAATGGTGA TATCTTAGAT TTAGAGCTTT CTGCATTGGA AAGCGAGAAT AAAGCTGAAA TTATTGCCAG TCCGCGGATC ACCACGGCGA ATCAGCAAAC CGCCTATATC GAACAGGGTA CAGAGATTCC TTATGTCGAG TCCGCTTCAT CCGGAGCAAC CTCCGTGGCT TTCAAAAAAG CAGTATTAAG TCTTACGGTG ACACCACAAA TTACACCCGA TAACAAGGTG ATCTTAGATT TGGAGATCAC CCAAGATACC GTGGGTGAGA CAGTTTCAGC CGGTACTGGT GAAGCTGTTG CTATTGATAC GCAGAAAATT GGTACTCAGG TCTTAGTTGG TAACGGCGAA ACATTGGTTT TAGGGGGTAT TTATCAACAA CGGAACTCAA TAGCTGTGAG TAAAGTGCCT CTTCTGGGAG ATATCCCTTA TTTAGGTGCC TTATTTAGAT CGACTAATGA GGAAAACACT AAGTCCGAGT TGTTGATTTT TGTCACACCA AGAATAGTCA TGCAAACTAA ATTCCGATAA
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Protein sequence | MNTSYLKTLF NIFPLVFLLY SPIGSAESQL GKLDINPLVD GKFELRFGFN ESISGYQDKL YYRPNKLVID IKDASSVLAL NPIKIEKGGI NNVATKRTEE GLRLTITLDT LMPYRVVQEN SLLFVRFGHT GADIAGSDKQ ELALASAVVQ NSGSQTTKTA TEKVNASALS SNQTTPKGYV NSIHSLDFKR GLEGQGKLLV YLDNSSIAVD IRRRNNQLIA EFQSTYIPDE LLYIMDVVDF ATAVEKVETF KEDGKTRLIF DIKDQYNYRY DQLDTLFMIE ISEKLQDQKE SAYQGKAISL NFQDIPVRTV LQLIADFNGF NLVITDSVSG NITLRLDDVP WEQALDIILK VKGLGKSLDG NVLMIAPAVE LAAKKREQLE SENAVANLAP LYSEFIQVNY AKVADISAML SSDKTSLLSE RGAVSVDNRT NTLLVKDTAA VIDAVKKMIQ ILDIPVRQVV IEARMVTVDD SVSEELGVKW GMTSTSSSTV DSLNVNLPAT DAAGTIAFKL AKFSNGDILD LELSALESEN KAEIIASPRI TTANQQTAYI EQGTEIPYVE SASSGATSVA FKKAVLSLTV TPQITPDNKV ILDLEITQDT VGETVSAGTG EAVAIDTQKI GTQVLVGNGE TLVLGGIYQQ RNSIAVSKVP LLGDIPYLGA LFRSTNEENT KSELLIFVTP RIVMQTKFR
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