| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0097 |
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| Symbol | |
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| ID | 4625020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 129387 |
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| End bp | 131375 |
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| Gene Length | 1989 bp |
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| Protein Length | 662 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 639795293 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_941570 |
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| Protein GI | 119943890 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.395857 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATCTTT TCATGATACA AAAAAAATTA TCTAAGCAAT TAATTTTCAG TTTGTTGGTT
TTATTGATTT GTGCGATTAA TGCAGGGCGT GTATCTGCCA CTGAATATTC GGCCAGTTTC
AAAAATGCGG ATATTAATGA GTTTATCAAT ATCGTTGGTA AAAATTTAAA TAAAACTATT
ATATTAGATC CGTCGGTGCG TGGCAGCATC AATGTACGCA GTTACGATTT GTTAAATGAA
AGACAGTATT ATCAGTTTTT CTTAAATGTC TTAGAGGTTT ATGGCTTCGC TACTGTTGAA
ATGGAGAATG GTATAGTCAA AGTAGTTAAA GCCAAGGACG CTAAAACAGC TGCTATCCCT
GTTGTTGATG ATGGCACAAC CTATATCGGT GACCAAATGG TGACCCGGGT AGTCCCTGTT
ACTAACGTTT CCGTGCGTGA GTTAGCCCCT CTATTGCGGC AATTAAATGA TAATGCCGGC
GGGGGTAATG TGGTGCATTA TGACCCTTCC AACGTCTTAA TGATCACCGG CCGAGCTGCT
GTTGTTAATC GTTTGGTAGA GATTGTTAAT CGGGTCGATA AGGCAGGTGA TCAGGAAGTT
GATATCATTA AACTTAAATA TGCCAGCGCG CTGGAGATGG TTAAAATTGT TGATGCGATT
CAGGGATCGT CAAGCGGGGC AAAAAATATC AGCTCATCTG TTTTACAGCC TAAATTAGTG
GCTGATGAAC GTACTAACTC GGTTATTATC AGCGGCGAAC CTAAATCGCG ATCGCGCATT
GTTAAGTTAA TTAAATCATT AGATGCTGAA CTGTTGAATG AGGGTAATAC ACAGGTTTTT
TACCTTAAAT ATGCAAGTGC TCAGGAAGTA GTTGATGTAT TAAAAGGGGT TAGTAAAAGT
ATTGATAGTC CCCAGGGAAA TGCGGCAGGC CAATCGGGCT CTGCTCAAGG GGGCCTCAGT
ATTGAAGCGC ATGAAGGTAC TAATGCGATT GTTGTTTCTG CACAACCGGC TCTGATGTCA
TCATTAACCA GTATTATTCG TCAATTAGAT ATTCGCCGTG CGCAAGTTTT AGTAGAAGCT
ATTATTGTCG AGGTTTCTGA AGGTGATGGT ATTAATCTTA ACGTTCAATG GGGAACCACC
AATGGTGGCA CACAATTCCA GGATAGTGCT GTCACGACTG GTAACATTGT AGCGGGTACA
CAGGACAATG ATGCGGCTAT TTCAGCAATA GGCAACATTT CCGGAGGAAT CGCCGGTTAT
ATAGGATCCA ATTGGGGTGT TGTGCTGCAG GCATTAAGCA GCGCCACAAC CTCTAATATA
TTAGCGACAC CGAGCTTAAC AACTTTGGAT AATCAGGAAG CCAGTTTTAT TGTCGGTGAT
GAAGTACCAG TTTTAACCGG CTCAACTTCC AGCGCAACTA ATGATAACCC ATTCCAAACC
ATTGAACGTA AAGAGATCGG CATTAAATTA AAGGTGACCC CGCAGATTAA TGAAGGGGAT
TCAGTGCAAA TGATCATTGA ACAAGAGGTT TCAGATATTA AAAATGATAC TTCCGCCGTG
GATGTTATTT TTTCGACTCG TTCAGTTAAA ACAACGGTAT TAGCAAAGTC AGGTGAAACC
ATCGTAATTG GTGGTTTGAT TGATGAAACT GTCAAAGAGA CTGTTCAGAA AGTGCCTTTA
TTGGGGGATA TTCCTTTGTT GGGATTCCTT TTCAGATCAA CTCAAAGTAG CACAGAAAAA
CGCAATCTAA TGATCTTCCT GCGCGCAACC ATTATCCGGG ATGATCAGAC TATGATGAAT
CTTAGTACGC GGAAATATAG TTTAATTCGA GCTGTTCAGG AAAAACAGCG TGATACTGGT
ATTAATTTGA TGCCTAACGC TACTCCTCCC ATCCTGCCTG AATGGGGGCA AAGTTATGAA
ATTAATCCGG ATCATTTCAT CAAGTCAGAA AGTAAAATCA GAAAACCAAC AACAGAAGGT
GTGAACTAA
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| Protein sequence | MNLFMIQKKL SKQLIFSLLV LLICAINAGR VSATEYSASF KNADINEFIN IVGKNLNKTI
ILDPSVRGSI NVRSYDLLNE RQYYQFFLNV LEVYGFATVE MENGIVKVVK AKDAKTAAIP
VVDDGTTYIG DQMVTRVVPV TNVSVRELAP LLRQLNDNAG GGNVVHYDPS NVLMITGRAA
VVNRLVEIVN RVDKAGDQEV DIIKLKYASA LEMVKIVDAI QGSSSGAKNI SSSVLQPKLV
ADERTNSVII SGEPKSRSRI VKLIKSLDAE LLNEGNTQVF YLKYASAQEV VDVLKGVSKS
IDSPQGNAAG QSGSAQGGLS IEAHEGTNAI VVSAQPALMS SLTSIIRQLD IRRAQVLVEA
IIVEVSEGDG INLNVQWGTT NGGTQFQDSA VTTGNIVAGT QDNDAAISAI GNISGGIAGY
IGSNWGVVLQ ALSSATTSNI LATPSLTTLD NQEASFIVGD EVPVLTGSTS SATNDNPFQT
IERKEIGIKL KVTPQINEGD SVQMIIEQEV SDIKNDTSAV DVIFSTRSVK TTVLAKSGET
IVIGGLIDET VKETVQKVPL LGDIPLLGFL FRSTQSSTEK RNLMIFLRAT IIRDDQTMMN
LSTRKYSLIR AVQEKQRDTG INLMPNATPP ILPEWGQSYE INPDHFIKSE SKIRKPTTEG
VN
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