Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_0040 |
Symbol | |
ID | 4623532 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | - |
Start bp | 58562 |
End bp | 59389 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 639795232 |
Product | diaminopimelate epimerase |
Protein accession | YP_941513 |
Protein GI | 119943833 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase [TIGR00654] phenazine biosynthesis protein PhzF family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00697529 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATATTC AATTTTCAAA AATGCACGGC TTGGGTAATG ACTTTATGGT CATTGATAAC GTCACGCAAA ATGTATTCCT TTCTAAAGAT ACGATCAGCC GTTTGGCGGA TCGTAATTTT GGTATTGGTT TTGACCAATT ATTAATGATT GAGCCCCCCT ATGATCCTGA GCTTGATTTT CATTATCGTA TTTTTAACGC AGATGGCAGT GAAGTAGAGC AGTGCGGTAA TGGTGCGCGT TGTTTTGCCC GTTTTGTTAA AATGAAAGGT TTGACACAAA AGCGGATTAT TAACGTCAGT ACCGCCAAGG GCAAAATTCA GCTCAAAATT GAGCATGACG GTAATATTAC TGTGGATATG GGTAAACCTA TTCTAGAGCC TGCAAAAGTA CCTTTCGAAG CTCAGAAAGA GGAAAAAACT TATATTCTCC GTGTAGAAGA CCATACTGTT CTATGCGGAG TAGTATCAAT AGGTAATCCA CATTGTGTGG TGTTGGTTGA CGATATTGAT AACGCTCCGG TTGAAACCTT AGGTCCGTTA TTAGAAAATC ATGAACGTTT TCCCAACAAG GTCAATGTGG GTTTCTTAGA AATAAAAAGT CGCGATCATG CCCGCTTAAG AGTTTGGGAG CGAGGGGTAG GTGAAACATT AGCCTGTGGC ACTGGAGCTT GTGCGGCGGC CGTCGTGGGT CAATTACAGG ATAAATTAAA TCCCCACTGT ACTATTGAAT TACCTGGCGG TGAACTGCGC TTATTTTGGC AACCCGGACA AAGTGTAAAA ATGACCGGCA CAGCTGATTT TGTCTTTGAT GGACAGATTC AAATTTAG
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Protein sequence | MNIQFSKMHG LGNDFMVIDN VTQNVFLSKD TISRLADRNF GIGFDQLLMI EPPYDPELDF HYRIFNADGS EVEQCGNGAR CFARFVKMKG LTQKRIINVS TAKGKIQLKI EHDGNITVDM GKPILEPAKV PFEAQKEEKT YILRVEDHTV LCGVVSIGNP HCVVLVDDID NAPVETLGPL LENHERFPNK VNVGFLEIKS RDHARLRVWE RGVGETLACG TGACAAAVVG QLQDKLNPHC TIELPGGELR LFWQPGQSVK MTGTADFVFD GQIQI
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