| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0028 |
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| Symbol | |
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| ID | 4624958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 40134 |
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| End bp | 43757 |
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| Gene Length | 3624 bp |
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| Protein Length | 1207 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 639795221 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_941502 |
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| Protein GI | 119943822 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.645983 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAAT ATCATTTCAA ATTCATCTGT CAGGGCCATG ATTCGCAAGA CAAGGATTCG
CCAGACAGTG AGCTGACATT ATTAAAATTT TCTGGTCAGG AAGGTATCTC CCGGTTATTT
AATTTTACAT TGGAGCTTAA ATCCACTGAT CTTAATTTAG ATGAAGACAG CTTACTGGAT
AAACCCTGCC GAATAGAAAT TTATGATGGC AAGCAAGCTA AACCTATTCG TATTATTCAT
GGTTTAGTCA ATGAATTTGA AGATATTAAC TACCTGCCTG ACTGCACCTT ATACCGCGCG
ACTATTGTCC CTAGAATCTG GCAGCTCGGA TTGTTTGAAA CCAATGAAGT GTATTTAAAC
GAAACCATTG AGCAGACACT GAGTGTTATA TTAGAGGAAG CCGGCTTTAT TGAAAATCAA
GATTTTCGCT TTGAACTTGC CCGTACTTAC CGTAAATGGC CCTTCAGGCT GCAATACAAC
GAAACCCATT TAGATTATCT GCAGCGCATT ATTGAGCGTG AGGGAATTTA TTATTATTTT
GAGCAAAGCG ACAGTGCCGA GGTGATTGTC TTTTGTGATA ATAACCAGGC ATTGCCGTCA
ATCGCCCAGC CCGACCAAAG CAGTAAAATT GTGTTTCAGG CCAATAGCGG TATTAATGTG
GCAAGCAAAG CAAACACAGT GACCAATATT ATCTGTAAAC GCCATACGCT GCCGAAAAAA
GTGACATTAC GTGATTTTAA TGACGAAACG CCCTCCTTAG ATATTCGTGG GGAGCATATT
ATTAATAATC GCGGCAGGGG AGAAATTAAC CTTTACGGAT TAAATATTAC TTCACCCGAA
GAGGGGCAGC AATTGGCGGA AATACATGCC AATGCTTATT TAAGCCGTCA AAAAGTGTAT
ATCGGTGAGA GTGATGCGGC GACTATGGTG ATAGGTCATA CTTTTAAGCT TAGCGAGCAT
CCTCGAGACA AGTTTAACCA GTTAACCTAT TTATTAGAAA GTATTGACCA TGAAGGTACT
AATTTAAATC AATATCAGGA ATTACACCCG GAAACAGATC TTGTGGTGAA TTACAGCAAC
AGTTTTACCG CGCTTTCAAC TGAGCATGAC TTTGCCCCGA AAAGACAAAC GCTCGCCCCT
GAGATTAACG GTACATTGAA TGCGGTTATC GATGCTGAAG CGGATTCCGG CTATGCGGAG
CTCGATGCGT TCGGCCGTTA CAAAGTCAAA TTGCCCTTTG ACCGAAAAGA TCGGTATGGC
GGCAAGGCTT CACATTGGGT ACGTATGATG CAGCCCTATG GCGGCGCAAA TGAAGGCATG
CATTTTCCGC TGCGCAATAA TACCCGGGTA TTATTGGGCT TTATTGGCGG CGATCCGGAT
CGACCCTTTA TCAGCGGCAC TATTAATGAC AGTGGCGACC AGCAGAGTAT TGTCACCGCT
GAAAATCAAA CCAACAATGT TATAAAAACC GCCTCTGGTA ATAAAATAGA GCTGGAAGAT
AAAGAGGGAA AAAACCGCAT TAAACTGCAG ACGGGGGATA ATCAAACCTA TATGCACTTA
GGGGCACCCA ATCATGATGG TTCGGGGTAT GTGATGGTGA CAGGGGGGAT AGAGCGCAGA
GATATTGGCG GTGGTCAGAG AGTAGATATT AGAACGGTAC CGGAGACCTT AAATGCTCCT
GCATATTCTT CAGACGAAAC TTACAGTCTT GGAGATTTAG TTCGTCATAG TGGAAAATTT
TATAAATGTA ACACTGCAAT TATTACAATT GAATCGTTTG CTAAGACAAA ATGGGATTTT
GTAGCGAATG TAGGGAACAG TGTAACTGCT TATTCGAATA GTAGTACTTA TACTGTCGAT
GATATCGTTA GTCATAACGG TAAATCATAC AAGTGTACTA CCGCAATAGA TCCTGCAGAG
GGGTTTACCG CTTCAAAGTG GAGTGTGATT GGAAGTGTAG CTACTTATTT GAATACTAAT
ACTTATGTTC TTAATGATAT TGTTAGTCAT AACGGTAAAT CATACAAGTG TACTACCGCA
ATAAATTCGG GAGAGGAGTT TACCGCTTTA AAGTGGAGTG GAATACATTT ATTTAGAGCT
TCAGTGGACT CTGCTTCTGC ATTCATTAGC CCCCATGATG AATATTCAGG TAAATATATT
ATTTCACGAA TCAATGGAGA GCAACATAAT TACAATGTAG GTAATAGATT TAATTATTAT
GCTACGGCTT CCGATGGTAC AGGTGTTTTT ACTCCGAATA GCGCTAATAA ACACTTTTTC
TTTGGTAATA ATTGGGAAGT GCATCATTCG GCTCACGGTA GTATCGAAAT TGATAGTCTT
AGTACAATCA TGGAGCAATA TGGTCTGGCG GGGGTACTTG ACTATGCAGG AAACCCTTTA
CCCGCGTCCG AACAAGCTGA TATTGATAAG GCTCAAACCG CTGCAGATAA TGCTCTAACT
ACAGCTCAAT ATAATCGAGA TAACCCAGTA TCTTCAGATA AAATTGCTGG TCTTGATAAG
GCTGTTACTG CGGCTAAAAA AGCCGCAACA ACAGATGCTG TTAACGCTAC TGCCAAATGG
TACAAATATT TAGAAAAAGG TCGCGTTAGT GTCGCGCAGC ACGATACTTT CACTGCGCAA
AACGGTAATA TTTTCGATTT TGGTGGTTAC TGGAATTATA ATTTGGGTAA TAGTTATGAG
GAAAATACTA TCACTCAAGG TAATACAGAA ATTAATCGTG ACAAGTTAGA CTATGACTGG
TGTGATATTG GAGGACCCAA CTGGACGGTA TTAACACCAC CATCTGACGC ATTTTCAAAA
TTTGGTAACC CTGACCTTAC TGGTTTCATA GGTAGTACTA ATATGGGAAA AAACATAGAT
GGTCATACCT ATGATTACAG TACGAATACT CATGGTATTG AGATAAACCA TAAATGTAAT
TCTTTCGAAC TTTCTGTCGG AGGAGAAAGC AGAGAAGTTA AATATAACGG TGAGGGGAAG
AAGACCTATG AGTCTAAGTC CGGCGCAGGA AAATCAGAAG AATGGAGCTG GACACCTGGA
GGGGAGTGGG GTACTTATTC TAAAAGTGTT TTTACCGATG AAGATGGTAA GTATAATGAA
AGTAAAAATT TTTTAAATTA CACACAAACT TCTTATGAAA CATCTAGCGA ACCGGCACCG
GGAGCTAAAT TTAGTTTTAA AGCGGATTAT TTACCAACGC TAGAAATGAA AATGGAAGTG
GACGTAGGCG AAACGAAACT CTCTACACAT ATAGGTGTCA TGTCAAATGA AGTTGATATA
GACCTTACGG CTATCAGAAA CGTTATCAAA GTTGAAGGCT TTTTATTAAA TACCGAGAAT
ATTTTAGCTC TAGAAACAAA ATTCGATTAT GGCGGAAAAT ATAAGAACTT TAGCTTGGTC
GCCGATTTTA ATCTGGATAC TGTTAGGCTT CAACTTGAAA AAAGAGCCGC GGTTATTGAG
ATGGCAGTAT ATGAATTAAG TGTAAAACAA AATGCTAAAA TTGCACTCAA TGCAGGAAAT
ATTGCAATAA ATAAAAAGGA TATAGAAGTA AACAAGAGTA GCATAAAAAT AAACAGTACA
GATATTATGC ATCTTATTTT TTAA
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| Protein sequence | MSQYHFKFIC QGHDSQDKDS PDSELTLLKF SGQEGISRLF NFTLELKSTD LNLDEDSLLD
KPCRIEIYDG KQAKPIRIIH GLVNEFEDIN YLPDCTLYRA TIVPRIWQLG LFETNEVYLN
ETIEQTLSVI LEEAGFIENQ DFRFELARTY RKWPFRLQYN ETHLDYLQRI IEREGIYYYF
EQSDSAEVIV FCDNNQALPS IAQPDQSSKI VFQANSGINV ASKANTVTNI ICKRHTLPKK
VTLRDFNDET PSLDIRGEHI INNRGRGEIN LYGLNITSPE EGQQLAEIHA NAYLSRQKVY
IGESDAATMV IGHTFKLSEH PRDKFNQLTY LLESIDHEGT NLNQYQELHP ETDLVVNYSN
SFTALSTEHD FAPKRQTLAP EINGTLNAVI DAEADSGYAE LDAFGRYKVK LPFDRKDRYG
GKASHWVRMM QPYGGANEGM HFPLRNNTRV LLGFIGGDPD RPFISGTIND SGDQQSIVTA
ENQTNNVIKT ASGNKIELED KEGKNRIKLQ TGDNQTYMHL GAPNHDGSGY VMVTGGIERR
DIGGGQRVDI RTVPETLNAP AYSSDETYSL GDLVRHSGKF YKCNTAIITI ESFAKTKWDF
VANVGNSVTA YSNSSTYTVD DIVSHNGKSY KCTTAIDPAE GFTASKWSVI GSVATYLNTN
TYVLNDIVSH NGKSYKCTTA INSGEEFTAL KWSGIHLFRA SVDSASAFIS PHDEYSGKYI
ISRINGEQHN YNVGNRFNYY ATASDGTGVF TPNSANKHFF FGNNWEVHHS AHGSIEIDSL
STIMEQYGLA GVLDYAGNPL PASEQADIDK AQTAADNALT TAQYNRDNPV SSDKIAGLDK
AVTAAKKAAT TDAVNATAKW YKYLEKGRVS VAQHDTFTAQ NGNIFDFGGY WNYNLGNSYE
ENTITQGNTE INRDKLDYDW CDIGGPNWTV LTPPSDAFSK FGNPDLTGFI GSTNMGKNID
GHTYDYSTNT HGIEINHKCN SFELSVGGES REVKYNGEGK KTYESKSGAG KSEEWSWTPG
GEWGTYSKSV FTDEDGKYNE SKNFLNYTQT SYETSSEPAP GAKFSFKADY LPTLEMKMEV
DVGETKLSTH IGVMSNEVDI DLTAIRNVIK VEGFLLNTEN ILALETKFDY GGKYKNFSLV
ADFNLDTVRL QLEKRAAVIE MAVYELSVKQ NAKIALNAGN IAINKKDIEV NKSSIKINST
DIMHLIF
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