Gene Ping_0010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0010 
Symbol 
ID4625099 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp16153 
End bp17052 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content39% 
IMG OID639795203 
Producttyrosine recombinase XerC 
Protein accessionYP_941484 
Protein GI119943804 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID[TIGR02224] tyrosine recombinase XerC 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCTT TACAACCTCT TATCGATACC TACTTAAATC ATATTGCCAG CCAGCGTGGT 
TTGAGCCCTG TTACCATCAC AAACTACCAA AGTAATTTAG CTGAATTTGT TGCCCTGTTA
AATGAAAATA AAGTAGGCTG TTGGACAGAG CTTGATGGAC AATTGGTGCG CTTAATGGTT
AAAACGCTGC ATAAAAAGGG CCTTAAAGCC CGTTCTATTG CAACCAAACT TTCCGCTTTA
CGCTCTTTTT TAGACTATTT AGTACAGTTT GATATTTTAA GTAACAATCC GGCAAAGGGT
ATAGCAGCAC CCAAATTAGA TAAGCCACTG CCTAAAAATG TGTCCGTTGA TGATATGTTT
CAATTGCTTG ATATAGATGA AAAAGATCCG CTTAGTATCC GTGATCAGTG CATGATGGAA
CTGATGTACT CCTCTGGATT ACGCCTTAGT GAGTTAGTTG GTATTAACTT ACAAGATATA
AAGTTATCTG CAAAAGAGAT AATGGTAACA GGTAAGGGAA GTAAGCAACG ATTATTACCT
ATTACCGATA GAGCGGTTGC GACTGTAAAA ATCTGGCTTA AAATCCGTCC TGAATTTTGT
ATAAAGGACG AAAAAGCACT CTTTGTTTCT AAGCAAAAAA AACGTATATC AGCGCGTAAT
GTACAGGCTA GAATGGAAAA ATGGGGCTTA AAACAAGCCT TACCGGGCCA TATAAATCCA
CATAAATTAC GGCACTCTTT TGCTACCCAT ATGCTTGAAT CAAGTGGTAA CCTGCGTGCG
GTGCAAACCT TGCTCGGCCA CGCAGATTTA GCCACAACGC AGATTTATAC CCACCTGGAT
TTTCAGCATT TATCAAAAAT TTATGACCAG GCACACCCGC GTGCTAAACG TAAAAAATAA
 
Protein sequence
MSALQPLIDT YLNHIASQRG LSPVTITNYQ SNLAEFVALL NENKVGCWTE LDGQLVRLMV 
KTLHKKGLKA RSIATKLSAL RSFLDYLVQF DILSNNPAKG IAAPKLDKPL PKNVSVDDMF
QLLDIDEKDP LSIRDQCMME LMYSSGLRLS ELVGINLQDI KLSAKEIMVT GKGSKQRLLP
ITDRAVATVK IWLKIRPEFC IKDEKALFVS KQKKRISARN VQARMEKWGL KQALPGHINP
HKLRHSFATH MLESSGNLRA VQTLLGHADL ATTQIYTHLD FQHLSKIYDQ AHPRAKRKK