| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mkms_5390 |
|---|
| Symbol | |
|---|
| ID | 4613074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. KMS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008705 |
|---|
| Strand | - |
|---|
| Start bp | 5625002 |
|---|
| End bp | 5625991 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639795085 |
|---|
| Product | cellulase |
|---|
| Protein accession | YP_941366 |
|---|
| Protein GI | 119871414 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG5297] Cellobiohydrolase A (1,4-beta-cellobiosidase A) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.217743 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCAG CTGTTGGTGC AGTCGCGCGG TGGGTCGCGC CGTTCCTGAC GGTCGCGGCC
GTCGCGGGTA CGGCCGCCGT CGCCGAACCC GTGAACGTCG ACCCCGCTCC GGCGGTGCGT
CTGGTCAGCG ATGCGAACCC GCTGGTCGGC AGGCCCTTCT ATGTCAATCC GGCGTCCAAG
GCCATGCGGG CGGTGCAGGG CAACTCGGAC CCGTTGCTGG CTTCGGTCGC CAACACCCCG
ACGGCGTACT GGATGGATCA CCTCTCCACC CCGTCGGTCG ACTCGAAGTA CATCGCCGAC
GCACAGGCCG CGGGCACCAC ACCGATCCTG GCGCTGTACG GCATCCCCAA CCGCGACTGC
GGGAGCTTCG CCGCGGGCGG ATTCGGCTCG GCCGGGGCGT ATCGAGCGTG GATCGACGGC
GTGGCCGGAG CCATCGGAGG GGGCCCGGCG GCGGTCGTCC TCGAACCCGA CGCGCTGGCC
ATGATCGACT GCCTGTCACC GGGCCAGCAG CAGGAACGCC TCGAGCTGAT CGGCTACGCC
GTCGACACCC TGACCCGCAA CCCGGCCACC GCGGTGTACG TGGACGCCGG TCATCCGCGC
TGGGTGGCCG CCGATGTGAT GGCCGGCCGG CTGAACCAGG TCGGCGTCGC CAAGGCGCGC
GGCTTCAGCC TCAACACCGC CAACTTCTTC ACCACCGAGG AGTCGATCGG CTACGGCCAG
GCCGTCTCGG GGATGACGAA CGGATCGCAC TTCGTGATCG ACACGTCGCG CAACGGCGTC
GGACCGGTCG ACAGCGATTC GTGGTGCAAC CCTCCCGGCC GCGCGTTGGG CACCCCGCCC
ACGACGGCCA CCGGCCACCC GCAGGTCGAC GCCTTCCTGT GGGTCAAGCG TCCCGGTGAG
TCCGACGGAT CGTGCGGCGG CGGGGCGCCC AGCGCGGGCA CGTTCGTCGC TCAGTACGCC
ATCGATCTGG CCCGCACCGC AGGCTGGTAG
|
|---|
| Protein sequence | MSSAVGAVAR WVAPFLTVAA VAGTAAVAEP VNVDPAPAVR LVSDANPLVG RPFYVNPASK
AMRAVQGNSD PLLASVANTP TAYWMDHLST PSVDSKYIAD AQAAGTTPIL ALYGIPNRDC
GSFAAGGFGS AGAYRAWIDG VAGAIGGGPA AVVLEPDALA MIDCLSPGQQ QERLELIGYA
VDTLTRNPAT AVYVDAGHPR WVAADVMAGR LNQVGVAKAR GFSLNTANFF TTEESIGYGQ
AVSGMTNGSH FVIDTSRNGV GPVDSDSWCN PPGRALGTPP TTATGHPQVD AFLWVKRPGE
SDGSCGGGAP SAGTFVAQYA IDLARTAGW
|
|---|
| |