| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mkms_4477 |
|---|
| Symbol | |
|---|
| ID | 4612421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. KMS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008705 |
|---|
| Strand | - |
|---|
| Start bp | 4705970 |
|---|
| End bp | 4708003 |
|---|
| Gene Length | 2034 bp |
|---|
| Protein Length | 677 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639794164 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_940458 |
|---|
| Protein GI | 119870506 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACA CCGTGAGAGA ACTGATCGAC CGCTCCAACC GTCTGGGCGC CGACCCGAAG
AACACCAACT ACGCCGGCGG CAACACCTCG GCCAAGGGCA CCGAGACCGA CCCGGTCACC
GGTGCGCCCG TGGAGTTGTT GTGGGTCAAG GGTTCCGGCG GTGACCTCGG CACGTTGACC
GAGAAGGGGC TGGCCGTGCT GCGGCTGGAT CGGATGCGCG CGCTCGTCGA CGTCTACCCG
GGTGTCGAGC GTGAGGACGA GATGGTCGCC GCGTTCGACT ACTGCCTGCA CGGCCGCGGC
GGCGCGGCAC CGTCGATCGA CACCGCCATG CACGGTCTGG TCGACGCCGC CCACGTCGAC
CACCTGCACC CCGACTCGGG TATCGCGATC GCGACGGCGG CCGACGGGGA AGCCTTGACC
AAGCAGATCT TCGGCGACCG GGTGGTGTGG GTGCCGTGGC GGCGGCCCGG CTTCCAGCTG
GGTCTCGACA TCGCGGAGAT CAAACGGGCC AACCCGCAGG CCATCGGCAC CATCCTCGGC
GGCCACGGCA TCACCGCGTG GGGTGACACG TCGGCCGAGG CCGAGGCGCA TTCGCTGGAG
ATCATCGAAA CCGCGGAGCG CTACATCGCC GAACACGGCC GCCGCTATCC GTTCGGCGCG
CCTCTGGCGG GCTACGGGGC CCTCCCCGAG GGTCAGCGCC GGGACAAGGC CGCCGCACTC
GCACCGTTCC TGCGTGGGCT GGTCTCCACC GACAAACCCC AGGTCGGCCA TTTCACCGAC
GATCCGCGCG TGCTCGAATT CCTCAGCTGC GGTGAGCATC CGCGACTGGC CGCCCTCGGC
ACCAGCTGCC CCGACCACTT CCTGCGCACC AAGGTCAAAC CGCTGGTGCT CGACCTGCCC
GCCGACACCT CGGTCGAGGA CTGCAAGGCG CGACTGGCCG AACTGCACGA GGCGTACCGC
GCCGACTACC GCGCCTACTA CGAGCGGCAC GCCGGACCCG ACAGCCCCGC GATGCGCGGC
GCCGACCCGG CCATCGTGCT GATCCCCGGT GTCGGGATGT TCAGCTACGG CAAGGACAAG
CAGACCGCGC GGGTCACGGG CGAGTTCTAC CTCAACGCGA TCAACGTCAT GCGGGGTGCC
GAGGCGATCT CCACGTACGC GCCGATCGAC GAGGCGGAGA AGTTCCGCAT CGAGTACTGG
GCGCTGGAGG AAGCCAAACT GCAGCGTATG CCGAAGCCCA AACCGCTGGC CACCCGCATC
GCGTTGGTGA CGGGCGCAGC CTCGGGTATC GGCAAGGCCA TCGCCACCCG GCTGGCCGCC
GAGGGCGCCT GCGTGGTGAT CGCGGATCTG GACGCCGGAA AGGCCGCGGC CGCAGCGGAA
GAGCTCGGGA ACACCGACAT GGCGGTGGGG ATCGCCGCCG ACGTCACCGA CGAAGCGGCG
GTGCAGGCCG CCGTCGACGC CACCGTCCTG GCGTTCGGCG GCATCGACAT CGTCGTCAAC
AACGCCGGTC TCTCCCTGTC GAAGTCGCTG CTCGAGACCA CCGCCGCGGA CTGGGACCTC
CAGCACGATG TGATGTCGCG CGGGTCCTTC CTGGTGTCCA AGGCCGCGGC CAGGGCGCTG
ATCGACCAGG GGCTCGGCGG CGACATCATC TACATCTCGT CGAAGAACTC GGTGTTCGCC
GGGCCGAACA ACATCGCGTA CTCGGCGACC AAGGCTGATC AGGCCCACCA GGTGCGGCTG
CTCGCGGCCG AACTCGGTGA GCACGGCGTC AAGGTCAACG GCATCAACCC CGACGGCGTG
GTGCGCGGTT CGGGCATCTT CGCCGGCGGC TGGGGCGCCA AACGGGCCGC GGTCTACGGG
GTTCCAGAGG AGGAGCTCGG CGCCTACTAC GCGCAACGCA CCCTGCTCAA GCGTGAGGTG
CTGCCCGAGA ACGTCGCCAA CGCCGCGTTC GCGCTGTGCA CGTCGGACTT CTCGCACACC
ACCGGGTTGC ATGTGCCGGT CGACGCGGGC GTCGCCGCGG CTTTCTTGCG ATGA
|
|---|
| Protein sequence | MTDTVRELID RSNRLGADPK NTNYAGGNTS AKGTETDPVT GAPVELLWVK GSGGDLGTLT
EKGLAVLRLD RMRALVDVYP GVEREDEMVA AFDYCLHGRG GAAPSIDTAM HGLVDAAHVD
HLHPDSGIAI ATAADGEALT KQIFGDRVVW VPWRRPGFQL GLDIAEIKRA NPQAIGTILG
GHGITAWGDT SAEAEAHSLE IIETAERYIA EHGRRYPFGA PLAGYGALPE GQRRDKAAAL
APFLRGLVST DKPQVGHFTD DPRVLEFLSC GEHPRLAALG TSCPDHFLRT KVKPLVLDLP
ADTSVEDCKA RLAELHEAYR ADYRAYYERH AGPDSPAMRG ADPAIVLIPG VGMFSYGKDK
QTARVTGEFY LNAINVMRGA EAISTYAPID EAEKFRIEYW ALEEAKLQRM PKPKPLATRI
ALVTGAASGI GKAIATRLAA EGACVVIADL DAGKAAAAAE ELGNTDMAVG IAADVTDEAA
VQAAVDATVL AFGGIDIVVN NAGLSLSKSL LETTAADWDL QHDVMSRGSF LVSKAAARAL
IDQGLGGDII YISSKNSVFA GPNNIAYSAT KADQAHQVRL LAAELGEHGV KVNGINPDGV
VRGSGIFAGG WGAKRAAVYG VPEEELGAYY AQRTLLKREV LPENVANAAF ALCTSDFSHT
TGLHVPVDAG VAAAFLR
|
|---|
| |