| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mkms_3152 |
|---|
| Symbol | |
|---|
| ID | 4610987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. KMS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008705 |
|---|
| Strand | - |
|---|
| Start bp | 3299358 |
|---|
| End bp | 3300272 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639792823 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D |
|---|
| Protein accession | YP_939136 |
|---|
| Protein GI | 119869184 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.311943 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTGC CGGAGGGGCT GGGCGGAATG CGGGTGGACG CCGGGCTGTC GCGGCTGCTG
GGGCTGTCAC GCACCGCGGC GGCGGCGATC GCCGAAGACG GTGGGGTCGA CATCGACGGC
GCGCCCGCGG GTAAGTCGGA CCGCCTCACG GCGGGCGCCT GGCTCGAGGT GCGGTTGCCG
GAGGCGCCGC CGCCGGTGGA GAACACCCCG GTCGAGATCG AGGGTATGGC GGTGCTGTAC
TCCGACGACG ACATCGTGGC CGTCGACAAA CCCCCAGGGG TGGCCGCCCA CGCGACGGTC
GGATGGCACG GCCCCACCGT GCTCGGTGGT CTGGCGGCCG CCGGCTTCCG GATCAGCACG
TCGGGCATCC ACGAGCGGCA GGGCATCGTG CACCGCCTCG ACGTCGGCAC CTCGGGGGTC
ATGGTCGTGG CCCTGTCCGA ACGCGCCTAC ACGGTGCTCA AGCGGGCGTT CAAGCAGCGC
ACCGTCGAGA AGCGGTATCA CGCGCTGGTA CAGGGCCATC CGGACCCGAG CAGCGGCACG
ATCGACGCGC CGATCGGGCG GCACCGGGGC CACGACTGGA AGTTCGCCGT CACCGAGGGC
GGCAGGCACA GCGTCACCCA CTACGACACG CTGGAGGCGT TCCAGGCGGC CAGCCTGCTC
GACATCGAAC TGGAAACCGG CCGCACCCAC CAGATCCGGG TGCACTTCGC CGCGCTGCAC
CACCCGTGCT GCGGCGATCT GACCTACGGC GCCGATCCCA CGCTGGCCCG CCGTCTCGGG
CTCGAACGTC AATGGCTGCA TGCCCGTTCG CTGGCGTTCG CCCATCCGGC CGACGGTCGC
CGGATCGAGA TCACCAGCCC CTATCCGGCC GATCTGCAGC ACGCCCTCGA CGTCCTGCGC
CGTCACGCGC GGTGA
|
|---|
| Protein sequence | MPVPEGLGGM RVDAGLSRLL GLSRTAAAAI AEDGGVDIDG APAGKSDRLT AGAWLEVRLP
EAPPPVENTP VEIEGMAVLY SDDDIVAVDK PPGVAAHATV GWHGPTVLGG LAAAGFRIST
SGIHERQGIV HRLDVGTSGV MVVALSERAY TVLKRAFKQR TVEKRYHALV QGHPDPSSGT
IDAPIGRHRG HDWKFAVTEG GRHSVTHYDT LEAFQAASLL DIELETGRTH QIRVHFAALH
HPCCGDLTYG ADPTLARRLG LERQWLHARS LAFAHPADGR RIEITSPYPA DLQHALDVLR
RHAR
|
|---|
| |