Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mkms_2209 |
Symbol | dapF |
ID | 4613386 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycobacterium sp. KMS |
Kingdom | Bacteria |
Replicon accession | NC_008705 |
Strand | + |
Start bp | 2322625 |
End bp | 2323506 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 639791874 |
Product | diaminopimelate epimerase |
Protein accession | YP_938197 |
Protein GI | 119868245 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0340996 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAGTTCG CCAAAGGTCA CGGGACGCAG AACGACTTCG TGCTGCTGCC CGATCTCGAC GCCCGGCTGG CTCTGACGCC GGCCGTCGTC TCCGCGCTGT GCGACCGGCG CCGCGGGCTC GGCGCCGACG GCGTGCTGCG GGTCACCACC GCGAAGGCGG CACTGTCGGC CGGTGTGTTC GAGCGGCTCC CCGAGGGTGT CGGGGCCGGC GACTGGTACA TGGACTACCG CAATGCGGAC GGGTCGATCG CCCAGATGTG CGGTAACGGC GTGCGCGTGT TCGCCCACTA CCTGCGCGCG GCGGACCTGG AGTCGCGCGA CGAGTTCGTC GTGGGGTCGC TGGCCGGGCC GCGGCCCGTC GTCCTGCACG GCTTCGACCT GGCCCACCGG TCGCGGGCCG AGGTGACCGT CGAGATGGGC AAGGTCAACC TGCTCGGCAG CGGGTCGGCG GTGGTCGGCG GGCGCCGATT CACCGGGCTG GGAATCGACG TCGGCAATCC GCACCTGGCC TGCGTCGACA CGACGCTGAC CGAGGCCGAA CTCGCGGCGC TCGACGTGGC CGCCCCGGTC GACTTCGACC CCGCCCAGTT CCCGGACGGG GTCAACGTCG AGGTGCTCAC CGCGCTGCGC GATGGGGCGG TGTCGATGCG GGTACACGAA CGGGGTGTGG GCGAAACGCG TTCGTGCGGT ACCGGCACAG TCGCTGCCGC CGTCGCGGCG TTGGCCCAGG AGGGGGCTGC GGTGGGCACG CTCGACGTCC GCATCCCCGG TGGCGTGGTC ACCGTCTCGG TCACCGACAC CACGAGTTTC CTGCGCGGAC CGTCGGAACT GGTCGCCACC GGCGAACTCG CCGGGGAATG GTGGCAATCT CATCAGCGTT AA
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Protein sequence | MQFAKGHGTQ NDFVLLPDLD ARLALTPAVV SALCDRRRGL GADGVLRVTT AKAALSAGVF ERLPEGVGAG DWYMDYRNAD GSIAQMCGNG VRVFAHYLRA ADLESRDEFV VGSLAGPRPV VLHGFDLAHR SRAEVTVEMG KVNLLGSGSA VVGGRRFTGL GIDVGNPHLA CVDTTLTEAE LAALDVAAPV DFDPAQFPDG VNVEVLTALR DGAVSMRVHE RGVGETRSCG TGTVAAAVAA LAQEGAAVGT LDVRIPGGVV TVSVTDTTSF LRGPSELVAT GELAGEWWQS HQR
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