Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pisl_1967 |
Symbol | |
ID | 4617273 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum islandicum DSM 4184 |
Kingdom | Archaea |
Replicon accession | NC_008701 |
Strand | - |
Start bp | 1783932 |
End bp | 1785542 |
Gene Length | 1611 bp |
Protein Length | 536 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639785058 |
Product | alpha amylase, catalytic region |
Protein accession | YP_931457 |
Protein GI | 119873450 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000720647 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.000000000127887 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGACTTGCG TAGTTGAGGG CTGGAGGGCG CATCCCTACT ACGGCGAGGT TGCTAAAGTA CGAATAGCCG GCGGCGAGAC TATAGGCGAT TTCTCAGGCT GGATCCGCGG GGCTTTTAGA GAGTACGTAG AGCTCCCGCC GGGGGTCTAT GAGGTTGTTG TAGACGACAG ACGAGAGGAG TGTGTAGTGG CGCCGCCTGA ATACCCATGG CATTTCGTAG TTCCCTACAT GGCGGTGGAC TGGGGAGATG TTGTAGAAAT CCGTATATAC GCCCCAGAGG AGCCCGAGGT GGGGCGTGGC AGAGTTGTAA AGCTTGCAGA CCTAGGGCCC TTCTCTATCT ACCTCGGGTT AGTCAAAGGG AGGAGATATA CACTCCGTTG TTGTGGTAAA ACTAGGCGTT TTAAATCCCC ACCGGTGGCC AATGCGCCTG GAGTGACTGC GATGTATGAA GTTCTGCCAG ACCGAGCCGC CGATAGACTC GGCTGTAGAG ACCTCAGGCG GGGTTACTGT GGCGGGACGT TAAGAGATGT GGCTAAGCTT GCAATTACGG CGCTTGATAT AGCAGATACG CTCTATCTCC ACCCGATATA CCCCGCAATG AGCTATCACC GCTACGACGT AGTTGACCAC CTACAGGTAG ACGAAAAACT AGGCGGCTGG AGCGCCTTTG TGACGATGAG AGAGACATTG AGACGGCGGG GGATGAAGCT TGTGTTAGAT ATCGTGCTTT ACCACGTGGG GTTGCGAAAC GCCATATTTC CAGAGGGCCC CTTTGTTTTT AAAAGCCTAG ACTATACACA TCTTGTCAAG AAGATAGCAG AGAAGATGCC TATGGAGGCG CTTCGCGAAT TATTTAGGGG GGAGCCGCCA TATGAGACTT TTCTAGACGT CTGGCTAATG CCAAAGCTCG ATTATTCAAA GCCTAGCGCT GTGGAATACG GGAGGAAAGT CGTCGAGTTT TGGAAAAGCC ACGTAGATGG ATTTAGGCTA GATGTAGCTC ACGGAATTCC GCCTGGCGCC TGGGCGGAGA TTTTAAAACC GGCGGAAGGG CTTTATATAT TTGGAGAACA CATGGGAAAC CCAGCGCCTT TCTATTGGGC AGTACCAGGG TTTACAGCGT ATTTACTCTA CAAGGCGGCG GTAGATTGGC TGGCTAAAGA CCTAGATAGA TTTGTGAAGT GGACGAACTT ATACATAGCG CTTACGCCAC CGGCGGCGTT GCCATATATG AACACCTTTC TTGAAAACCA TGATACAGAC AGAGCCGCCT CTATTTTTGA CATAAATACG CTATATAGAG GGTATGCCCT GATTTTCTCA CTGCCGGGAG TCCCCTCTAT TTACGCAGGT GGCGAATGTG GAGAAGTCGG CAGAGCAGAA GACCACACTA ATAGAAGGCC TTACAGCCCC TGTCCCGACT CCCCACTTAG GGAGTTTTTA AAGAGATTAT ACACGACGAG GAGAGAACTA GCTCTTTACA AAGGGCCTGC GTGGGTTGAG ACAAGGCGCT CTGAGCTCGT TATACACAGG GGGGCTGTAG ACGTCGCCGT TGGCATAAAT AAACTTATAG TGAGTAATAC CGAGAGATAT ATAGAACACA AGTTTTTATA G
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Protein sequence | MTCVVEGWRA HPYYGEVAKV RIAGGETIGD FSGWIRGAFR EYVELPPGVY EVVVDDRREE CVVAPPEYPW HFVVPYMAVD WGDVVEIRIY APEEPEVGRG RVVKLADLGP FSIYLGLVKG RRYTLRCCGK TRRFKSPPVA NAPGVTAMYE VLPDRAADRL GCRDLRRGYC GGTLRDVAKL AITALDIADT LYLHPIYPAM SYHRYDVVDH LQVDEKLGGW SAFVTMRETL RRRGMKLVLD IVLYHVGLRN AIFPEGPFVF KSLDYTHLVK KIAEKMPMEA LRELFRGEPP YETFLDVWLM PKLDYSKPSA VEYGRKVVEF WKSHVDGFRL DVAHGIPPGA WAEILKPAEG LYIFGEHMGN PAPFYWAVPG FTAYLLYKAA VDWLAKDLDR FVKWTNLYIA LTPPAALPYM NTFLENHDTD RAASIFDINT LYRGYALIFS LPGVPSIYAG GECGEVGRAE DHTNRRPYSP CPDSPLREFL KRLYTTRREL ALYKGPAWVE TRRSELVIHR GAVDVAVGIN KLIVSNTERY IEHKFL
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