| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1674 |
|---|
| Symbol | |
|---|
| ID | 4617848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | - |
|---|
| Start bp | 1519357 |
|---|
| End bp | 1520220 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 639784757 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_931169 |
|---|
| Protein GI | 119873162 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1499] NMD protein affecting ribosome stability and mRNA decay |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.0136926 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTAAAG TACCTTGTCC TTACTGCGGC CGCCTTGTTG ATAGACTAAT TGAGGGCATG
TGTGAGGAGT GTTATATAGA GAGACATCCC CTCATAAGTC TATTTGATAG TACGTTACTA
AAGTGTAAAT TCTGCGGGGC TATCTTCCTA AAGGGTAGAT GGATAAAGAC AGAAAAAGTA
GAAAAGACAA ACTTTTTTAG AAAAGTTCTT ACTGAAAAGG GAGTTGTAAG GGGCTTAGTA
GAGAACTTGG AAATATCTGA GAACAAAGAG GGTGTTACTA TAACTGTGAC CGTAAGGGGT
TCTCCGCATC CGCATATACT CCCGCGGGCT TTAACATATA AGTTTTTTAT AAAATATAAC
TATGATATTT GTAATTATTG TAAAGAAATT CTAAGTAAAA AAGAGGTTGC ATTATTGCAG
ATACGTACAA TACCAAGGGG ATTAGATGAA CAGCTTAAAA AGAAGATTTT AGCCATAATA
GAACATGAAC GGTTTAAACT AAGAGAGAAA AAAGTAGGCC ATATAAGTAA TATAGAGTTT
ATGGAAAACG GAATTGATAT ATACACGACT TCTATAAGTC TGGCACGTCA TTTAACTTAC
GTATTACACA AAGAGTTTCC AAGTCATGTT ATAGAGTCGG CAAAAGTTGT AGGTGTGAAA
AATAGTAAAA AAGTATACCA TATGACATAT TCCCTACGTA TTCTCACATA TAAACCAGGC
GATATAATAA GAATGGGAGA CGAAGAATTA ACCATTATAC ACATAAATAA TAAGTTTATA
AGTCTATATA ATAAAAAAAC TAAAAAAATT GAAAACGTAA CTATTTCGAA ATTTATAAAT
AGTAACATAG TCTTTATTGA ATAG
|
|---|
| Protein sequence | MAKVPCPYCG RLVDRLIEGM CEECYIERHP LISLFDSTLL KCKFCGAIFL KGRWIKTEKV
EKTNFFRKVL TEKGVVRGLV ENLEISENKE GVTITVTVRG SPHPHILPRA LTYKFFIKYN
YDICNYCKEI LSKKEVALLQ IRTIPRGLDE QLKKKILAII EHERFKLREK KVGHISNIEF
MENGIDIYTT SISLARHLTY VLHKEFPSHV IESAKVVGVK NSKKVYHMTY SLRILTYKPG
DIIRMGDEEL TIIHINNKFI SLYNKKTKKI ENVTISKFIN SNIVFIE
|
|---|
| |