Gene Pisl_1654 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPisl_1654 
Symbol 
ID4617851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum islandicum DSM 4184 
KingdomArchaea 
Replicon accessionNC_008701 
Strand
Start bp1504006 
End bp1504524 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content40% 
IMG OID639784737 
Productputative RNA-binding protein 
Protein accessionYP_931149 
Protein GI119873142 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2016] Predicted RNA-binding protein (contains PUA domain) 
TIGRFAM ID[TIGR00451] uncharacterized domain 2 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.00738213 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGAAACGCA CAAGGCTTAG CAACAGGGAG ATTAAAGAAT TGCGTGAGAC ATACAACTTT 
ATGACGTCTA TATTAGAGGA GGCAGATGTG GTAGAAGTGG CTCATGTATC TGAAAAACAA
CATATCTATT TAGTAGATGG AGAGCCTCTA TTTTTAAAGG TCTCAGAGGG GGAGTTGGGG
GTTTTTGTTG TCCCCACTCT CTATCTTATT CACAAATCTT CAAAGAATAG GCTTCTCCCT
CAGTATCCCA AAGCCGTGGT AGATCAAGGT GCGGTTGTTC GCATAATAAA AGGCGCAGAT
ATTATGCGCC CTGGGATAAA GAGCTTTGTT GGCGATTTTA ATAAGGGGGA TATTGTATTT
GTAACAGACG AAAAAAACCG TGTGATTGCT ATATCAGTAG CCCTATATTC GAAGTCCGAA
ATTGAACAGA TGCAAAAGGG TAAAGTCTTG ATAAACTTAC ATCACCTAGG TGATAAGATT
TGGGAAATTT CCCTAAAGTT GGTCAAGGAA AAATCTTAG
 
Protein sequence
MKRTRLSNRE IKELRETYNF MTSILEEADV VEVAHVSEKQ HIYLVDGEPL FLKVSEGELG 
VFVVPTLYLI HKSSKNRLLP QYPKAVVDQG AVVRIIKGAD IMRPGIKSFV GDFNKGDIVF
VTDEKNRVIA ISVALYSKSE IEQMQKGKVL INLHHLGDKI WEISLKLVKE KS