| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1504 |
|---|
| Symbol | |
|---|
| ID | 4617276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | + |
|---|
| Start bp | 1372325 |
|---|
| End bp | 1373293 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639784587 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_931003 |
|---|
| Protein GI | 119872996 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000493434 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 0.801041 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGCGAG AAAAAACTCT AGAGTTGATT AAGAGGCCTG GGGGGTCGGG GCGGGTCCTC
ATCACGGGCT GCGCGGGGTT TATCGGGAGT TGGCTGGCCG AGGCCTACTC GGGGGCTGGG
TGGGAGGTGT ACTGCGTGGA CAACTTCTCG ACTGGGCGTA TGGAGAACAT CTCCCACCTC
CCCGTCCGCC TCCTTAGGGG GAACGTGGAG GAGGTGGAGC TGCCGAGGTT CGACTTGGCT
TTCCACGGGG CTGCGCTTCC GGCGCCTGAT TTCTACGTCA AGAGGCCTGT GGAGGCTATG
TTGCCGGATA GCCTGGGCCT CCTTAGGGTT CTTAGGAGGG CGGCGGAGTC GGGGGGGCGG
GTGGTGTTTC TCAGTAGCTC GGAGGTCTAT GGAGACCCCG AGGTGGTGCC TACGCCTGAG
TCCTACTGGG GTAGGGTGAA CCCGGTGGGG GTTAGGAGCC CATACGACGA GTCGAAGAGG
TTTGGCGAGG CGTTGTGTAT GGCCTTCCGT AGGGAGTACG GCGTTGATGT GAGGGTCGCC
AGGATCTTCA ACACCTACGG CCCCCGCCTC GACCCCGACA GCTCCTACGC CCGGGTTGTG
ACTAAGTTTC TCGTCCAGGC GCTGAGGGGC GAGCCTATTA CTGTACATGG CGACGGCCTC
CAGACTAGGA GTTTTGCCTA TGTGAGCGAC GTGGTAAACG GCTTGATTAC CATCGCCCAC
TGCGAGAGGT GCGCCGGGGA GGTGTACAAC GTGGGTAGCG ACGAGGAGGT GACTATCCTC
GAGCTCGCCA AGCTAGTCAA GGAGGTGGCG GGCTCGGCCT CCCCCATTGT ACACACGCCG
CCGCGGCCCG ACGACCCCAG GAGGAGGAGG CCGGATTTGT CTAAGCTGAG GGCTCTGGGG
TGGGAGCCTG TGGTAAAGCT TAAAGAGGGT CTTTCCCTGA CTCTGCTATG GCTTCGCTCT
CTGTTCTAG
|
|---|
| Protein sequence | MWREKTLELI KRPGGSGRVL ITGCAGFIGS WLAEAYSGAG WEVYCVDNFS TGRMENISHL
PVRLLRGNVE EVELPRFDLA FHGAALPAPD FYVKRPVEAM LPDSLGLLRV LRRAAESGGR
VVFLSSSEVY GDPEVVPTPE SYWGRVNPVG VRSPYDESKR FGEALCMAFR REYGVDVRVA
RIFNTYGPRL DPDSSYARVV TKFLVQALRG EPITVHGDGL QTRSFAYVSD VVNGLITIAH
CERCAGEVYN VGSDEEVTIL ELAKLVKEVA GSASPIVHTP PRPDDPRRRR PDLSKLRALG
WEPVVKLKEG LSLTLLWLRS LF
|
|---|
| |