Gene Pisl_1344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPisl_1344 
Symbol 
ID4616501 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum islandicum DSM 4184 
KingdomArchaea 
Replicon accessionNC_008701 
Strand
Start bp1222320 
End bp1223702 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content47% 
IMG OID639784433 
ProductD-lactate dehydrogenase (cytochrome) 
Protein accessionYP_930850 
Protein GI119872843 
COG category[C] Energy production and conversion 
COG ID[COG0277] FAD/FMN-containing dehydrogenases 
TIGRFAM ID[TIGR00387] glycolate oxidase, subunit GlcD 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.230995 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones74 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGTGA CAGTAGATTT AGAGAAACGC TTAGGCAAAG AAAAAGTGAT TAGAGATCCA 
GATATATTGC GTATATACGC CAGAGATCCC ACCTTGTTGG AGTACCAACT TCCGTTAGCC
GTGGTATATG CGGAATCTGT AAACGACGTC GTTGAAGTCG TTAAGTTTGC CATTGAGAAT
AAGTTATATA TCACGCCTGT CTTCCACTCA ACCTCTCTTT CCGGCAACGC CGCCACCACA
GCGCAGAAAA CCATAGTGCT TTCATCAGAG AAAATGAATA GAATTCTTGA GGTGTCAGAA
GTGGACTGGC TAGCTACGGT CGAACCTGGG ATAAGAATAG ACGAGTTTAA CCTAGAGCTG
ATGCGCTACG GTTTACAATG GCCGGTGGAT CCTGCATCTT CTAAGACGGC CTCTGTAGGG
GGCACTATAA TTAACGGTGG CGGCGGCATG AGGGGGGCTA AATATGGCCC GGCTTCTCAC
TGGGTACTCG GACTAGAGGC GGTAATTGGC ACTGGCGAAA TTATCAGAGT CGGATGCCGC
ACAGTCAAAT GTAGAGAGGG CTACGATATA CTCCATTTGT TCGTGGGTAG CGAGGGGACT
TTGGGGATTA TAACCAAAGC AATGCTGAGA CTGGCGCCTC TGCCAGAGTC TTTCGTGGGG
GTCGTAGCCC AATTTGAAGA CGTTGTCTCA CTGGCGAAGG CCGTTGTTGA AAGCAGACGG
AGAAGGCTGT GGCTATTAGT GGCGGAGTTT ATGGATGACG ACAGTTCTGA ATTCGTGGGG
CTTGAGCGAA AGTACACGCT TTGGCTCGGC ATAGATGCCA CAAAAGGGTC TGAAGATGTC
ATGTTAACGC GTCTTAGAGA AGTTATAGAT AAAGTCGGCG GGAAAATAAG CGCCGAGGCG
AGAGACTGGG GAACCTTCTT CAAACTACTG GGACCCCGCC GTCTGTTATA TCCAGCGTCC
GTCAAAAAAG CCATAGAACA ATACGGCGGA GACGCTTTAG TACTTATAGG CGATGTGGCC
GTGCCGTTTT CTAAGCTACC TGAAGCGTTA CAGGAGATGA AACAAACCGC CAAGGATTAC
GGCATACCAA CGATATTTGG CGGACACGTA GGCGATGGCA ATATCCACCC TATACTGTGG
TTTAATAAGT CAGATGAAAT TCAGAAAAAG AAAGTCGCTG AGCTCTATGA AAGGTTTGAC
GAAATTGCAC TAAGACATGA AGGTACTATA AGTGCAGAAC ACGGCATAGG GCTTCATAAG
AAAGAGTTCC TGAAGAAAAC GTATGAAGCA AAGAACTCGG CGGCCGTCCT CAGAATATTT
AGAGAAATTA AACGCATATT TGATCCCTAC GGCATATTTA ACCCTGGCAA GATATTCGAC
TAA
 
Protein sequence
MSVTVDLEKR LGKEKVIRDP DILRIYARDP TLLEYQLPLA VVYAESVNDV VEVVKFAIEN 
KLYITPVFHS TSLSGNAATT AQKTIVLSSE KMNRILEVSE VDWLATVEPG IRIDEFNLEL
MRYGLQWPVD PASSKTASVG GTIINGGGGM RGAKYGPASH WVLGLEAVIG TGEIIRVGCR
TVKCREGYDI LHLFVGSEGT LGIITKAMLR LAPLPESFVG VVAQFEDVVS LAKAVVESRR
RRLWLLVAEF MDDDSSEFVG LERKYTLWLG IDATKGSEDV MLTRLREVID KVGGKISAEA
RDWGTFFKLL GPRRLLYPAS VKKAIEQYGG DALVLIGDVA VPFSKLPEAL QEMKQTAKDY
GIPTIFGGHV GDGNIHPILW FNKSDEIQKK KVAELYERFD EIALRHEGTI SAEHGIGLHK
KEFLKKTYEA KNSAAVLRIF REIKRIFDPY GIFNPGKIFD