| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1236 |
|---|
| Symbol | |
|---|
| ID | 4618024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | + |
|---|
| Start bp | 1120062 |
|---|
| End bp | 1121480 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639784326 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_930744 |
|---|
| Protein GI | 119872737 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTAGCTT TTCACCTCCA CCTCTATCAG CCAGAGAGAG CCGACCCGTG GCTCGAGATT
ATTTTTCCTG AGCCGTCCGC ATCTCCCTAT AGACACTGGA ATGAGCGCAT ATCACATGAA
TGTTATGAGC CAAATGCCGA GCTTGGGAAC TATCAGTGGG TGAGTTTTGA CGTGGGGCCG
ACACTACTTA ATTGGCTTCG TCAAAATAAG CCGCTTGTAT ACATGGCGTT GTTAGAGGCA
GATAGAGCGG GAGCGGAGAG GTGGGGCCAT GGCAATGCGC TTGCGCATCC ATATTATCAC
GTCATCCTTC CGCTCCTTCC GAGGCGAGAT AGAGAAGTGC TCATCTACTG GGGGATAGAG
TATTTCAAGA GACACTTTAG GAGGAGTCCT GAGGGTATGT GGCTCCCAGA GATGGCCGTC
GATTACGAGA CGCTGGAGGT TTTAGTTGAC TACGGCATTT CCTATACAGT GTTGACACAA
AGTCAGATAA AGGACAGAAG GTCTGGGGGG CCTTATAAAG TGGTGCTTCC AAGCGGTAGG
AATATTGCCG TTTTTGTCCG AAATGAGACT CTCTCTAATA ATTTGGCATT TGGCGGATTT
GAGAAATTTG TAGAAGCTCT AAGAGGAGTC TCTGGAGATA TAGTCATAGC TCTTGATGGA
GAGACTTTTG GTCACCATAT AAAAGGCGCA GAGAAAGCGT TGGCGCAATT TATTGCCAGC
CGCCGTGGGG AATTGACAAA CTTGGGGAAG CTTTACGAAA ATGGCTATAT CGGCGAGGTG
GAGATTATTG AAAAAACTTC GTGGAGTTGT CCACACGGCC TCGGAAGATG GAGTAGAGAC
TGTGGATGCG ACGGCCCCGC CCCTTGGAGA GAGGGGCTGA GGAAGCTAGT GGATTGGGTA
GGCGAGGTGG TGGATAAAGT TTTTGATGAA AAATTTGGGG TGCGCGGCTG GCAGATGTTA
AAAGAATATA TAAACGTGAT TTTAGGCGGT GATAACTCGG CGTTTTCTCC AGAGGAGCTT
AGACTTCTTG AGGCAGAGAG GGCTAAGCTT GCCGCCAATA CCAGCGACGC GTGGTTTTTT
GCAAAAGTTG GGATAGAGTT TGGCATCGCT GTGAAATGGG CGCTTAGAGC TGTGGAACTT
CTCGGCGATT TGTCGTTACT TGAAGAATTT ACGAAGAGAC TTGGCGAGAT TGTTTTTGAC
GGCAAGACGG CCCTAGCCTA CTGCCCCATG ATTAGAGGCC CGCTTATGGC TGCGATGATG
TATATCTCGC TCCTTACCTC TGGACATACG CCAGAGAAGG TCGGGCCGTA TGTAATACGG
CAGGTAAACG ACGAATTTGA AATTTTTGAC GTTAGGACTC GAGACTCATT TCGTTTTCGC
CATGACTTAT TATGGGGATT TTTAGAAAGT TTTAAATAA
|
|---|
| Protein sequence | MLAFHLHLYQ PERADPWLEI IFPEPSASPY RHWNERISHE CYEPNAELGN YQWVSFDVGP
TLLNWLRQNK PLVYMALLEA DRAGAERWGH GNALAHPYYH VILPLLPRRD REVLIYWGIE
YFKRHFRRSP EGMWLPEMAV DYETLEVLVD YGISYTVLTQ SQIKDRRSGG PYKVVLPSGR
NIAVFVRNET LSNNLAFGGF EKFVEALRGV SGDIVIALDG ETFGHHIKGA EKALAQFIAS
RRGELTNLGK LYENGYIGEV EIIEKTSWSC PHGLGRWSRD CGCDGPAPWR EGLRKLVDWV
GEVVDKVFDE KFGVRGWQML KEYINVILGG DNSAFSPEEL RLLEAERAKL AANTSDAWFF
AKVGIEFGIA VKWALRAVEL LGDLSLLEEF TKRLGEIVFD GKTALAYCPM IRGPLMAAMM
YISLLTSGHT PEKVGPYVIR QVNDEFEIFD VRTRDSFRFR HDLLWGFLES FK
|
|---|
| |