| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1188 |
|---|
| Symbol | |
|---|
| ID | 4616789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | + |
|---|
| Start bp | 1080180 |
|---|
| End bp | 1081325 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639784281 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_930699 |
|---|
| Protein GI | 119872692 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAATGG TAACTAGGAG GAGGTTTCTC GTCGGCGTAG TTGCCGCTAC TGTTATAGTT
GCTGTAGGAG GCAGCCTTCT GTTTTTCACG CGTAGACAAG AGACGCCGCC GGTTACAACA
AAGGCGCCGC GCGGTGGACA CTTAGCTGTC TATAACTACT CTTATTACAT AGATAAAGAT
CTGCTTGTCG AGTTTGAGAA AGAGACCGGC ATCAAGGTGA TATACCAAGA GTTTGAAAGC
GGGGAGGAGG CCTACGCCGC TCTCCTCAGA GGTGGGGGTG GATACGATCT TATTGTAGTG
CCAGACACGT ACCTAAAGGA CGTGATTAAG AGGGGCTACG TGAGGAAGAT AGACCACGGC
AGACTTACAA ACATTGGCAA TATTGATCTA GCGTTTTTCG AAAACCCAAA TGACCCTGGC
CTTCAACACT CTGTTCCCTA CGCCTTTGGT ACTACGGGCT TTGCTGTCAA TTACTACTCC
ATGGCTGTAG ACGTTGGCAG AAGGCTTGAC AGTTGGAGCG ACCTCTTTGA CTTCGACCTA
TTAGAGAAGA TGAAGAACAG AGTAGCCATG CTAGAGGAGT TTATAGAGCC TGTCATGGCG
GCTAAATACG CCCTCGGGAT AGATCCCAAC GACTGGAGCC AGGAGGCGGT GGATAAGGTG
ACGGATCTTC TAAAGAGACA GAAAGGCTAC ATCAGGGGGT ACATGGGGAT AAGCCAGATC
GTGCCGGCTA TAGCCGCCGG CGAGCTGTGG GTTTCGCAAA TCTGGAGCGG AGACGCTGCC
ACAGCCCGCG ACGAGTTTAT TAAACACGCC GGCGAGAAAA ACGCCGATAA GTTCGAGTAC
GTACTGCCAA AGCCCATGAC GCACAGATGG GTCGACTTTA TGGTCATCCC CCGCGACGCG
AAAAACATCG ACGCGGCATA CGCCTTCATA GACTTCCTGC TTAGACCCGA GAACTCAGCC
AGGATCACCA AGGCCTCCTA CTACCCAACT GCGTTGAAGA GACAGCTAAT AGAGAAATAC
CTCGATCCAG ACATACTCCA AGATCCCGCA GTCTTTCCGC CTGAGGGGGC TAAGCTGATT
TACCTAAACT ACACGGAGGA GATGATTAAG GCGGTGGAGA AGATAAGCTA CGCTGTTAAA
GGCTAA
|
|---|
| Protein sequence | MTMVTRRRFL VGVVAATVIV AVGGSLLFFT RRQETPPVTT KAPRGGHLAV YNYSYYIDKD
LLVEFEKETG IKVIYQEFES GEEAYAALLR GGGGYDLIVV PDTYLKDVIK RGYVRKIDHG
RLTNIGNIDL AFFENPNDPG LQHSVPYAFG TTGFAVNYYS MAVDVGRRLD SWSDLFDFDL
LEKMKNRVAM LEEFIEPVMA AKYALGIDPN DWSQEAVDKV TDLLKRQKGY IRGYMGISQI
VPAIAAGELW VSQIWSGDAA TARDEFIKHA GEKNADKFEY VLPKPMTHRW VDFMVIPRDA
KNIDAAYAFI DFLLRPENSA RITKASYYPT ALKRQLIEKY LDPDILQDPA VFPPEGAKLI
YLNYTEEMIK AVEKISYAVK G
|
|---|
| |