Gene Pisl_0893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPisl_0893 
Symbol 
ID4617308 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum islandicum DSM 4184 
KingdomArchaea 
Replicon accessionNC_008701 
Strand
Start bp797199 
End bp797750 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content41% 
IMG OID639783989 
ProducttRNA-splicing endonuclease subunit alpha 
Protein accessionYP_930412 
Protein GI119872405 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1676] tRNA splicing endonuclease 
TIGRFAM ID[TIGR00324] tRNA intron endonuclease 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value0.935192 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGGCG TGCTAAAGGG GCTTGCAGTA GTAGTAGAAG ATGTAGAATT TGCTAGGAAA 
TTATACAAAG AAGGTTTCTA CGGCAGGTTC TTAGGTTATG ATAAAGTAAG AAGAGAGGAA
GTTGACAAGA TATCCGCTCC TTTGATATTG GCGCTGTATG AAGCTCTTTA TCTAGCTGAG
AGAGGTAAGC TAAAGGTAGT GTCAAAAAAC GGCACAGAAG TACTGCCGGA AAAATTAATA
GAATTAGGCA GAGAGAAGAT AAAAAATTTT GATGATATAT ACAAGATCTA TAAGTATTTC
CGAGATCTTG GATATGTTGT TAAAAGTGGA CTTAAATTCG GCGCTCTCTT TTCCGTCTAC
GAGAGAGGCC CAGGCATAGA CCACGCTCCT ATGGTTGTAG TGTTTCTAGA ACCTGACAGA
GGGATTTCTG CCACCGATAT AACAAGAGGG GGCAGGCTGA GCCATAGTGT TAAAAAGACC
TTTACTCTAG CAACAGTGTC TAAACAAACT GGAGAAGTAG TGCTACTTGG TTTCTCTTGG
GCTAAACTTT AA
 
Protein sequence
MKGVLKGLAV VVEDVEFARK LYKEGFYGRF LGYDKVRREE VDKISAPLIL ALYEALYLAE 
RGKLKVVSKN GTEVLPEKLI ELGREKIKNF DDIYKIYKYF RDLGYVVKSG LKFGALFSVY
ERGPGIDHAP MVVVFLEPDR GISATDITRG GRLSHSVKKT FTLATVSKQT GEVVLLGFSW
AKL