Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pisl_0893 |
Symbol | |
ID | 4617308 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum islandicum DSM 4184 |
Kingdom | Archaea |
Replicon accession | NC_008701 |
Strand | - |
Start bp | 797199 |
End bp | 797750 |
Gene Length | 552 bp |
Protein Length | 183 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 639783989 |
Product | tRNA-splicing endonuclease subunit alpha |
Protein accession | YP_930412 |
Protein GI | 119872405 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1676] tRNA splicing endonuclease |
TIGRFAM ID | [TIGR00324] tRNA intron endonuclease |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 0.935192 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGGCG TGCTAAAGGG GCTTGCAGTA GTAGTAGAAG ATGTAGAATT TGCTAGGAAA TTATACAAAG AAGGTTTCTA CGGCAGGTTC TTAGGTTATG ATAAAGTAAG AAGAGAGGAA GTTGACAAGA TATCCGCTCC TTTGATATTG GCGCTGTATG AAGCTCTTTA TCTAGCTGAG AGAGGTAAGC TAAAGGTAGT GTCAAAAAAC GGCACAGAAG TACTGCCGGA AAAATTAATA GAATTAGGCA GAGAGAAGAT AAAAAATTTT GATGATATAT ACAAGATCTA TAAGTATTTC CGAGATCTTG GATATGTTGT TAAAAGTGGA CTTAAATTCG GCGCTCTCTT TTCCGTCTAC GAGAGAGGCC CAGGCATAGA CCACGCTCCT ATGGTTGTAG TGTTTCTAGA ACCTGACAGA GGGATTTCTG CCACCGATAT AACAAGAGGG GGCAGGCTGA GCCATAGTGT TAAAAAGACC TTTACTCTAG CAACAGTGTC TAAACAAACT GGAGAAGTAG TGCTACTTGG TTTCTCTTGG GCTAAACTTT AA
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Protein sequence | MKGVLKGLAV VVEDVEFARK LYKEGFYGRF LGYDKVRREE VDKISAPLIL ALYEALYLAE RGKLKVVSKN GTEVLPEKLI ELGREKIKNF DDIYKIYKYF RDLGYVVKSG LKFGALFSVY ERGPGIDHAP MVVVFLEPDR GISATDITRG GRLSHSVKKT FTLATVSKQT GEVVLLGFSW AKL
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