| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_0701 |
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| Symbol | |
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| ID | 4617363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum islandicum DSM 4184 |
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| Kingdom | Archaea |
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| Replicon accession | NC_008701 |
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| Strand | - |
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| Start bp | 634708 |
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| End bp | 635847 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 639783796 |
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| Product | DNA-directed RNA polymerase subunit A'' |
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| Protein accession | YP_930222 |
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| Protein GI | 119872215 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02389] DNA-directed RNA polymerase, subunit A'' |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000485708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.0226668 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTCAA AACAAGAAGT CCTAGAAAGA GTTGCCAAAA TCTTGCCACA ACCTATTTAC
AAAGAACTAG AAAATGTAGT AAAAGACCTA GACGAAGAAA AAGCGCTTCG AATAATATAT
CGCGTACTAA AGCTCTACAT TACGTCGTTA ATAGACCCAG GAGAGGCCAT AGGTATTATA
ACAGCTCAAT CTATAGGGGA GCCTAGTACA CAAATGATAT TACGTTCCTT CCACTATGCA
GGGCTGAGAG AATTCTCAAT GGCAAGAGGT CTGCCCAGGC TCATAGAAAT TGTAGATGCC
AGAAGAAACC CCTCTACGCC GCTTATGTTT ATTTATCTAA AGCCGCCTTA TAACCGGGAT
AGAGAGAAGG CAGAGACTGT CGCTAAAAAG ATTCAACAAG TAACTCTTGA GATGTTAGCT
AAAGAGATAG ACGTAGACTA TATAGCTGGG ACTATAACAA TAACACTAGA CCAAGAACAA
TTAAAGTACC GCGGCTTAAG TCTGAAAGAT GTAGAGAGAG TGGTGACAAA GACCAAGGGA
AAGGACTTTA CAGTGTCTAT GCGTGGACAT ACAATTACAG TATCTTTAGC AACGCCAGAC
GTGCTTAGAA TTAGGAAAAT ACGTGATAAA ATCCTCCAGA TAAAAATTGC CGGCATAAAG
GGAGTGAGAA AAGTGGTGCT CCAATACGAT ACAAAAAACG GTGAGTGGTA CATAATTACA
GAAGGGACGA ATTTAGAGGC TGTGCTCCAG CTAGAGGAGG TAGACGCTAC AAGAACTTAC
AGCAACGACT TACATGAGGT AGAGGAGGTT TTAGGAATAG AAGCGACAAG AACTTTGGTT
GCACAGGAGA TAAAGCGTGT GTTAGACGAA CAAGGACTTG ACGTCGATAT TAGACATATG
TACCTAGTGG CGGACGCTAT GACGTGGTCA GGCAAGTTAA GGCCCATTGG GCGTCATGGC
GTCGTAGGCA CGAAGGAGTC TCCGCTTGCT CGTGCAGCAT TTGAAGTAAC AGTAAAAACC
TTGATAGAAG CCGCAGTAAG AGGGGAGGAG GAGAAGTTTA AGGGTGTTGT AGAAAGCATT
ATAGCTGGTA AATATATCCC TGTTGGGACA GGAATAGTAC GTCTCTTAAT GCAGTTTTAA
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| Protein sequence | MISKQEVLER VAKILPQPIY KELENVVKDL DEEKALRIIY RVLKLYITSL IDPGEAIGII
TAQSIGEPST QMILRSFHYA GLREFSMARG LPRLIEIVDA RRNPSTPLMF IYLKPPYNRD
REKAETVAKK IQQVTLEMLA KEIDVDYIAG TITITLDQEQ LKYRGLSLKD VERVVTKTKG
KDFTVSMRGH TITVSLATPD VLRIRKIRDK ILQIKIAGIK GVRKVVLQYD TKNGEWYIIT
EGTNLEAVLQ LEEVDATRTY SNDLHEVEEV LGIEATRTLV AQEIKRVLDE QGLDVDIRHM
YLVADAMTWS GKLRPIGRHG VVGTKESPLA RAAFEVTVKT LIEAAVRGEE EKFKGVVESI
IAGKYIPVGT GIVRLLMQF
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