| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_0637 |
|---|
| Symbol | |
|---|
| ID | 4617097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | - |
|---|
| Start bp | 580922 |
|---|
| End bp | 582118 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639783731 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_930158 |
|---|
| Protein GI | 119872151 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01910] acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00222046 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0000509449 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGAAA AGGCCGTATC CCTTTTAAGG AGACTAATCT CAATTCCCAC GGTTAATCCC
CCTGGCGAGA AATATGCTGA GTTTGTAGAT TTCGCAGAGA GATATTTTAA ATCTCTGGGT
TTAGACACCG AGGTTTTAGA AGTCCCAAAG TCTGAGGTTG CAAAAGTATG TCCCGAATGT
GTGGACTACC CACGGCTTAT TTTAATAGCT AGGATGGGAG AGCCGAGGAT CCACTTTAAT
GGACATTACG ATGTAGTGCC GCCGGGTCCC CTAGAGAGTT GGAAGGTAAC AAAACCTTTT
GAACCGCTTT ATAAAGACGG GCGGCTCTAT GGCAGAGGTG CTGTAGATAT GAAAGGCGGC
CTTACGTCAA TTATGCTAGC AGTGGAAAAG GCCGTGACGG CTGGCGTGAA AAATTTCGAG
GTTTCATTCG TTCCTGACGA GGAAATAGGC GGCGAAACTG GAGCCGGTTA CTTAGCTAGG
TCTGGTAAAA TAAAAGCACC TTGGGTAATA ATAGCAGAGG GCTCAGGCGA GGATAACATC
TGGATTGGCC ACAGAGGGCT CGTGTGGTTT ATGGTGGAGG TATATGGAAG GCAAGCCCAC
GGTTCTACAC CTTGGCTTGG CTTAAACGCC TTTGAGGGCG CGGCGTATAT TGCGTATAGA
CTTCAGGAGT ATATCAAGGC GATATCTACA AGGGTAAGTA AATACGAGTA TGAAGATCCG
CGGGGGGCTT CGCCTACAAT TACCATAGGC GGAGAGGTGA GAGGTTCTGT AAAAACCAAC
GTGGTACCTG GTTATTTCGC CTTTTCTGTA GATCGGAGAG TTATACCAGA GGAAGACATA
GAGGAGGTAA AACGCGAGTT TATCGCTTTC GTAGAGAAAA TAGCGAAAGA GATACCTCAT
AGAGTGGAGG TGAAAGTTAC AAACATATCA GAGCCTGCCC TGGTAGAGCC AAACCATCCA
CTGGTAGAGA CTCTTGCTTC TGCCGTTGAG GAAGTGGTTG GCAAAAAACC TAAGAGAACC
GTATGTATAG GCGGATTAGA CGCCAGATTC TTTATAAAAG CTGGAATACC TACAGTCACC
TACGGTCCAG GCCCCGTCAA TTTAGCCCAT GCGCCAGACG AATATGTCGA AGTAAAACAG
GTGATAAACG TAGCCGAGAC GTACTTTAGA GTTATCAAAA AACTAGCTGT CCGTTAA
|
|---|
| Protein sequence | MEEKAVSLLR RLISIPTVNP PGEKYAEFVD FAERYFKSLG LDTEVLEVPK SEVAKVCPEC
VDYPRLILIA RMGEPRIHFN GHYDVVPPGP LESWKVTKPF EPLYKDGRLY GRGAVDMKGG
LTSIMLAVEK AVTAGVKNFE VSFVPDEEIG GETGAGYLAR SGKIKAPWVI IAEGSGEDNI
WIGHRGLVWF MVEVYGRQAH GSTPWLGLNA FEGAAYIAYR LQEYIKAIST RVSKYEYEDP
RGASPTITIG GEVRGSVKTN VVPGYFAFSV DRRVIPEEDI EEVKREFIAF VEKIAKEIPH
RVEVKVTNIS EPALVEPNHP LVETLASAVE EVVGKKPKRT VCIGGLDARF FIKAGIPTVT
YGPGPVNLAH APDEYVEVKQ VINVAETYFR VIKKLAVR
|
|---|
| |