Gene Pisl_0566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPisl_0566 
Symbol 
ID4617524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum islandicum DSM 4184 
KingdomArchaea 
Replicon accessionNC_008701 
Strand
Start bp522229 
End bp523152 
Gene Length924 bp 
Protein Length307 aa 
Translation table11 
GC content40% 
IMG OID639783656 
ProductD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 
Protein accessionYP_930087 
Protein GI119872080 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.132391 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.00110885 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTAGCAC TTATCGTAGA CAATGTCGAT TTACTCATAA AAGAAAGGCT AGAGAAAATT 
GGAATAAAAG TTGATATAAA ACCAGGTATT TCAAGAGAGC AGTTATTAAA TATAATAGGA
GACTATGATA TTTTAATTTT TAGGGGAAGG CTAAGAATAG ATCGAGAGAT TATTGATGCA
GGCACAAATT TGAAAATTTT AGCAAGATAT GGCGTTGGGT TAGATAACGT AGATGTTGAA
TATGCTGTAA AAAGGGGTAT TGCAGTTGTT AGCGCCCCTC GCGCACCTAC ACAGAGCGTC
GCCGAATTAA CGATAGGTCT TATGCTTGCA GTCGCCCGTA GAATTCCGTT GCTGAATGCC
AAGGTAAAGG AGGGCGAGTG GCCTAAAGGC AAATATATAG GTATTGAACT AAGCGGAAAA
ACTCTTGGTG TCTTAGGATT TGGTAGAATA GGTAGGGCTG TAGCTCAAAT AGCTAAGGGC
TTAGGTATGA AAATTCTAGC AAGTGACATA GTAGATGTAA GTTCCGACGT GGAGAAACTG
GGAGGTAGAC AAGTGTCGCT ACAAGAGCTT CTAAAAGAAA GCGATGTATT GTCTATCCAT
GTACCTCTAA CACCGGACAC ATATAGATTA ATTAATGCCG ATAGACTCGC TTTAGTAAAA
GATAATGCCA TATTGATAAA CACAAGCCGG GGTGAGGTCG TTGATCATGA AGCGTTACTA
CAACACATAG ATAGACTATG GGGCGTTGGC CTAGACGTTT TACCAGAGGA ACCCCCCAAA
AGCCCCTATC TGAGAAAATT GATAACACAC GAAAAAGTTG TAATAACGCC ACATGTAGGT
TCCGAGACTT ATGAAGCAAT GAGAAGACTA GCCGAGGAGC TTGTGTTAAA CATAGAAGAA
GTGGTCTCGA GAATAAGGCT ATGA
 
Protein sequence
MLALIVDNVD LLIKERLEKI GIKVDIKPGI SREQLLNIIG DYDILIFRGR LRIDREIIDA 
GTNLKILARY GVGLDNVDVE YAVKRGIAVV SAPRAPTQSV AELTIGLMLA VARRIPLLNA
KVKEGEWPKG KYIGIELSGK TLGVLGFGRI GRAVAQIAKG LGMKILASDI VDVSSDVEKL
GGRQVSLQEL LKESDVLSIH VPLTPDTYRL INADRLALVK DNAILINTSR GEVVDHEALL
QHIDRLWGVG LDVLPEEPPK SPYLRKLITH EKVVITPHVG SETYEAMRRL AEELVLNIEE
VVSRIRL