| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_0509 |
|---|
| Symbol | |
|---|
| ID | 4617883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | - |
|---|
| Start bp | 474122 |
|---|
| End bp | 475963 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639783599 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_930030 |
|---|
| Protein GI | 119872023 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.0655973 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAAAG TTGTCACGGC GTTAGATCTT CTAGCTTCAG CTGTAGAGAT GTCTAATCTG
ATCAACAATA GAGTTGAAAA TATATACAAG ACAGGAGCTG GGTTTTTGTT TAAATTTACA
TCTGGGTTTA TGACTATAAC TAAGTTTAGG GCTTCTCTAA CTGGTGTTAT ACCTGAAAAA
AGCCACGAGG GGGCTGAAAC ACTCAGGGGG TTGTTTCGAG GTGAAAAGCT AGTAAAAGTT
TACATGCCTC GTTTTGACCG TATTTTAGAA CTTGAGTTTG TGTCTGGAAA AATAATTATC
GAACTGATAG AGCCCTTTAA CATTGTGTCT GTCAGAGATG GAAAGATAGT ATGGCTTTTA
CATAGCTATA GAGGTAGAGA CCGCGAATTA AAGCCGGGCC TGTCCTACGT TTATCCACCG
GCAGCATTTA TTGATATCTT TACTGCAGAT GTTAACGCTA TTGAGAAGGC GATAGACCCT
GGCGATGTAA AGAAGAGCTT AGTTAGACGT CTGGGCACAG GTCCTGAGCT TGCAGAAGAG
CTTATTGCAC GAGCAGGCTC TTCGCCGAGA GCTCTTGCGG AGACGCTGAA GATTATTGTA
GATCAGATAC GCATTGGCAA AATAGAGCCC ACGGTATGTA TAAAAGAGAA TATTCCTGTC
ACAGTCCTCC CTATAAGACT CACCGCCATA CAATGCGACG AGTTAAAACA ATTTACGCAT
TTTTGGGAAG CCCTAGATTA CTACTTTTCT CCAATGGAAC TGGGGTCTAC TCTCATCCAA
GAGACTCAGG AGTTAATACA GAGACGTAAA AAGCTGGAAA CAACAATAGC AGAACTAGAG
AAGAAGATCC CCGAGTATAA GAAGGAGGCG TCTCTTCTGA AAACTACTGC TCATAAACTT
CTGATGTATA AATCAGAGAT AGAAGATGCA TTAAGGGGTT ACGAGACTAG TATACGTGTA
GTATACGTAA ACAAGAGGGT AAAAATAGAA CTTCCCGATG GCACAGTTGT AGAACTTGAG
AAAGACATCC CAGTGGGACG TCAAATATCG CGGATGTTTG AACATGCAAA AGAGTTAGAA
GAAAAGGCGA ATAAGGCGGC ACAGGTTGTG GAGAAACTCA GAAGAGACCT GGCTAAGTTA
GAAGAGGAGA TACACCGCGC CGAGGAGAAA GTTAAGTCTT CTGTAAAAAT AGTTGTTAAA
AGGGCTTGGT TTGAGAAATT TCGCTGGTCT ATTACCACAG GTAAGAGACC GATAATTGGG
GGTAGAGACG CGTCGCAAAA TGAGACTATT GTAAGAAAAT ACCTTAGGGA ACACTACCTC
TTCTTTCATG CAGATATCCC AGGCGCTTCA GTGGTTGTAA TGCCCCCATC AGAGGACCCC
CTTGAGTTAT TACAAACTGC ACAGTTTGCC GCTGCATATA GCAAGGCATG GAAAATTGGG
ATACATTCAA TAGATGTATA CTACGTCCGC GGCGAGCAAG TCTCTAAACA TGCGCCCGCC
GGCCAATATC TTGCCCGTGG CTCGTTTATG ATATATGGCA AAAGGGAGTA TATTAGACAC
GTCCGTTTAG AGCTGGCAGT GGGTTGTAGA AAAGATGGAG ATATCTATAG AGTAGTGGCG
GCACCGCCAA AATCAGCGCA ACTATTAGCT GATAGATACG TTATCATATC GCCAGGCGGC
GTAGAAAAGA GCAAATTAGG TAGAGAGCTA GCCAAGAAGT GGGGGGGATG TTCTCTCGAA
GAGATAGTAG CCGCTATCCC TGGCCCCTCA CAGATAGCTG AGGAGGGGCG GGGATCGCCC
CTCTCTTGGG AGGAAGTGGA GAGAGTCTTT GCCACGTGGT AG
|
|---|
| Protein sequence | MKKVVTALDL LASAVEMSNL INNRVENIYK TGAGFLFKFT SGFMTITKFR ASLTGVIPEK
SHEGAETLRG LFRGEKLVKV YMPRFDRILE LEFVSGKIII ELIEPFNIVS VRDGKIVWLL
HSYRGRDREL KPGLSYVYPP AAFIDIFTAD VNAIEKAIDP GDVKKSLVRR LGTGPELAEE
LIARAGSSPR ALAETLKIIV DQIRIGKIEP TVCIKENIPV TVLPIRLTAI QCDELKQFTH
FWEALDYYFS PMELGSTLIQ ETQELIQRRK KLETTIAELE KKIPEYKKEA SLLKTTAHKL
LMYKSEIEDA LRGYETSIRV VYVNKRVKIE LPDGTVVELE KDIPVGRQIS RMFEHAKELE
EKANKAAQVV EKLRRDLAKL EEEIHRAEEK VKSSVKIVVK RAWFEKFRWS ITTGKRPIIG
GRDASQNETI VRKYLREHYL FFHADIPGAS VVVMPPSEDP LELLQTAQFA AAYSKAWKIG
IHSIDVYYVR GEQVSKHAPA GQYLARGSFM IYGKREYIRH VRLELAVGCR KDGDIYRVVA
APPKSAQLLA DRYVIISPGG VEKSKLGREL AKKWGGCSLE EIVAAIPGPS QIAEEGRGSP
LSWEEVERVF ATW
|
|---|
| |