Gene Pisl_0385 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPisl_0385 
Symbol 
ID4617808 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum islandicum DSM 4184 
KingdomArchaea 
Replicon accessionNC_008701 
Strand
Start bp370873 
End bp371526 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content46% 
IMG OID639783465 
Product5-amino-6-(5-phosphoribosylamino)uracil reductase 
Protein accessionYP_929906 
Protein GI119871899 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1985] Pyrimidine reductase, riboflavin biosynthesis 
TIGRFAM ID[TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR01508] 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value0.216591 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACCAT ACGTCTATCT AGTTGCCGCA ACTACGATAG ACGGTAGGAT AGCTAGTTAT 
ACAGGATATT CACGTTTGTC ATGTCCATAC GATTTAAAAA GACTTCATTC GATAAGGGCT
AGTGTAGACG CAATAATAGT GGGGGCAAAT ACCGCCATTG TAGACAACCC TAGGCTAACA
GTGAGGTATG TCGAGGGAAA AAACCCGATG CGTGTATTGA TAGACGGGGC GCTTCGCGCC
CCCCTCACGC TCCGTATATT CGACTCCTCG GCGCCGACTG TTGTATTTAC TACACATAAA
GCGCCGCAAG ACAAGATACA TGAGCTGCAA AAACGTGGTG TGAAGATCTA TATAACGGAA
GGCGAAACAG TCGACCCCGC TTATGTGTTA GATACGTTAT ATAAACAGGG AGTGAGGAAA
GTGTTACTAG AGGGGGGCGG CAGGACGAAT TGGGAATTTC TCTCCAAGTG TCTTGTCGAT
GAAATAATTC TAACTGTAAC GCCATATGTA TTTGGAAGAG GGGTCTCCCT AGTAGAGGGG
GCCGGATTTG CCACTACTGA AGATACGCCG TTTGCTCTTA CGCTACATTC TATAAAGCTT
TGTGAATGCG GCCAAGAGGT AGTGTTGAAA TACCACGTAT CTTGTAAACA TTAG
 
Protein sequence
MRPYVYLVAA TTIDGRIASY TGYSRLSCPY DLKRLHSIRA SVDAIIVGAN TAIVDNPRLT 
VRYVEGKNPM RVLIDGALRA PLTLRIFDSS APTVVFTTHK APQDKIHELQ KRGVKIYITE
GETVDPAYVL DTLYKQGVRK VLLEGGGRTN WEFLSKCLVD EIILTVTPYV FGRGVSLVEG
AGFATTEDTP FALTLHSIKL CECGQEVVLK YHVSCKH