| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_0247 |
|---|
| Symbol | sdhA |
|---|
| ID | 4617521 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | - |
|---|
| Start bp | 240273 |
|---|
| End bp | 242000 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639783327 |
|---|
| Product | succinate dehydrogenase flavoprotein subunit |
|---|
| Protein accession | YP_929770 |
|---|
| Protein GI | 119871763 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|---|
| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.828778 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAC TTATATATGA CGTAGTGGTA ATAGGCAGCG GCCTAGCTGG ACTGAGAGCA
GCAGTTGCCG CAGCCCTCCG GGGGGTCTCG GTGGCCGTGG TCACCAAGAC CTCGGGCCCC
CGGTCCCACA GCATCTCCGC CGAGGGCGGG ATGGCAGCGG TGGTACACCC GGAGAAGACC
GGCGACAGCC CGGAGCTCCA CGCCTATGAC ACCGTGAAGG GCGGGGACTT CCTGGTAGAT
CAAGAGGCGG CTATAGTGCT GGCGAGGGAG GCCCCCGCCG AGGTTAAGTT CCTGGACTCC
ATCGGGGTGC CCTGGAGCAG AGACCCCGAT GGAACCTACA GTCTGAGGAT GTTCGGCGGT
ATGTCTAAGC CTAGGACAGT CTTTGCAAAG GATAGGACAG GATTCTACAT AATGACAGCG
CTGTATAGAT ATGCCAAGTC TTTCCACAAT ATCCATTTTT ACGAAGAGTA CTTTGTCACG
ACGCTAGTGG TGAAAAACGA CGTCTTCTAC GGCCTGGTGG CGTTAGACAT GAGGAGGGGA
GAGCTGGTGG GGTTTGTGGC CAAGGCCGGC GTCATCGCGG CAGGGGGCGC GGGGAGACTC
TACCGTATGA CCACCATGGG GTGGCTAAAC ACGGGCGAGG TTCTGGGCTA CGCGCTTAAG
GCAGGCGCGG CGCTGAGAGA TATGGAGTTT GTCCAGTGGC ACCCCACGGC GCTGGTCCCA
AGCGGCATAT TGATAAGCGA GGCCGCCAGG GCCGAGGGGG GCTACCTCGT GAATAGACAC
GGCGAGAGGT TCATGAAGAG GTACGCCCCC GAGAAGATGG AGCTGGCGCC GAGGGACGTA
GTGTCTAGGG CAATAATCAC CGAGTGCATG GAGGGTAGGG GGTTCCTCCA CGAGTCGGGC
CTCTGCTACG TAGGTCTCGA CGTTAGGCAC ATAGATAGGA AGAGACTAGA GGAGAGGCTA
CCCCTCCTCC TGGAGCTCTC TAAGACCTAT GCCGGGGTTG ATCCAACCAC GGAGTTGATA
CCCGTGAGGC CGGCCGTCCA CTACTTCATG GGCGGAATAT ATACAGACGT CCGGGGGAGG
GTGCTGAACC ACAGGGGTGA GTGGATCCGG GGTCTCTGGG CGGCTGGGGA AGCCGCCTCT
ACCGGCGTAC ACGGGGCTAA CAGACTGGGC TCCAACTCCC TAACTGAGTG CGCCGTCTGG
GGGAGGATTG TGGGAGAAGA GGCGGCTGTC TACGCAATGG GGAGGCCGGC CCTCAGCACT
ACTGTCGTAA GACTAGAGAT ACAGAAGGAG GAAGAGCGAA TAGCGAAGCT CATAAAAAAT
GAACACGGGG GTATGACTCC GCTTAGCTTA AGAGCTAAGC TACAAGACCT CATGGAGAGG
GGAGCTGGCA TAGTTAGACA CGGTAGCGTT ACCTCTGAGG CTCTACGAAG ACTTAATAAG
CTGTTTGATA TGTTAAAAGA GGTAAGGATT ACAGACGGGG GGAGGATTTA CAATATGGAA
TTGAGAGAAG TACTTGAGCT ATACGGCATG TTATACGCCG CCCAGGCCGT GCTGACAGGC
GCCCTTTTGA GACGAGAGTC TAGAGGAGCT CACTACCGTC TAGATTTCCC TAGGCGCGAT
GACGACTGGC TTGTACACAC TGTGTACTAT CTATATGGCG ACACTTTGCA CGTCTCAACG
ACAAAAGTGG AAATCACCAG ATGGATGCCG GAGACAAGGA GATATTGA
|
|---|
| Protein sequence | MDLLIYDVVV IGSGLAGLRA AVAAALRGVS VAVVTKTSGP RSHSISAEGG MAAVVHPEKT
GDSPELHAYD TVKGGDFLVD QEAAIVLARE APAEVKFLDS IGVPWSRDPD GTYSLRMFGG
MSKPRTVFAK DRTGFYIMTA LYRYAKSFHN IHFYEEYFVT TLVVKNDVFY GLVALDMRRG
ELVGFVAKAG VIAAGGAGRL YRMTTMGWLN TGEVLGYALK AGAALRDMEF VQWHPTALVP
SGILISEAAR AEGGYLVNRH GERFMKRYAP EKMELAPRDV VSRAIITECM EGRGFLHESG
LCYVGLDVRH IDRKRLEERL PLLLELSKTY AGVDPTTELI PVRPAVHYFM GGIYTDVRGR
VLNHRGEWIR GLWAAGEAAS TGVHGANRLG SNSLTECAVW GRIVGEEAAV YAMGRPALST
TVVRLEIQKE EERIAKLIKN EHGGMTPLSL RAKLQDLMER GAGIVRHGSV TSEALRRLNK
LFDMLKEVRI TDGGRIYNME LREVLELYGM LYAAQAVLTG ALLRRESRGA HYRLDFPRRD
DDWLVHTVYY LYGDTLHVST TKVEITRWMP ETRRY
|
|---|
| |