| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3654 |
|---|
| Symbol | gidB |
|---|
| ID | 4605901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 4303155 |
|---|
| End bp | 4303775 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639783079 |
|---|
| Product | 16S rRNA methyltransferase GidB |
|---|
| Protein accession | YP_929526 |
|---|
| Protein GI | 119776786 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0357] Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division |
|---|
| TIGRFAM ID | [TIGR00138] 16S rRNA methyltransferase GidB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.611058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00060095 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTTAGCCG AAAAACTCAG TCAGGATCTC GCCAAAGCGG GCCTGCAGGT CGATGCCCAG
CAGCAACAGC AATTACTTGC CTTTGTGGCG CTGCTCGACA AGTGGAACAA GGCCTATAAC
CTGACGTCGG TGCGGGAACC GGCGCAAATG CTGACCCGGC ACATTCTCGA TAGCCTGGTG
GTGTCACCTC ATCTGGTGGG TTCGCGTTTT ATCGATGTGG GCACAGGGCC TGGCTTGCCG
GGTATTCCGC TGGCTATCAT CAATCCGGAC AAAGAGTTTG TTTTGCTGGA TAGTCTGGGC
AAACGTATTC GTTTCCAAAA ACAGGTTGCT GTGGAGCTTG GGCTGAAAAA CATCAGCTCG
GTGGAAAGCC GGGTCGAGCT GTATCAACCT GAGCAGGGAT TTGATGGTGT GCTGAGTCGC
GCGTTTGCCT CTGTGGGGGA CATGCTCAGC TGGTGCCATC ATTTACCAGC TGAAAACGGC
AGTTTTTATG CCCTCAAGGG CCAGCTTGGT GATGAAGAGA TGGCCGGGAT CCCCGAAGGC
TTTAAGTTGA TTGAAACCAT CAGGCTCACA GTCCCCGGAC TGGATGAGCA AAGGCATCTG
CTGAAATTGG TCAAAGCGTG A
|
|---|
| Protein sequence | MLAEKLSQDL AKAGLQVDAQ QQQQLLAFVA LLDKWNKAYN LTSVREPAQM LTRHILDSLV
VSPHLVGSRF IDVGTGPGLP GIPLAIINPD KEFVLLDSLG KRIRFQKQVA VELGLKNISS
VESRVELYQP EQGFDGVLSR AFASVGDMLS WCHHLPAENG SFYALKGQLG DEEMAGIPEG
FKLIETIRLT VPGLDEQRHL LKLVKA
|
|---|
| |