| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3647 |
|---|
| Symbol | |
|---|
| ID | 4605894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 4298594 |
|---|
| End bp | 4299127 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639783072 |
|---|
| Product | F0F1 ATP synthase subunit delta |
|---|
| Protein accession | YP_929519 |
|---|
| Protein GI | 119776779 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0712] F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) |
|---|
| TIGRFAM ID | [TIGR01145] ATP synthase, F1 delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000294276 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000779697 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGT TAACCACCAT TGCTCGCCCT TATGCAAAGG CAGCTTTTGA TTTTGCCGTT
GAAAAACAAG CCGTGGACAG CTGGGCCGAA ATGCTCGGTT TTGCTGCGCT GGTAAGTGAA
AACGAAACCA TGCGCCCACT GCTCGCTGGC TCTATGGCCA GTAGCGCGCT CGCCAAACTC
TTTATTGACG TTTGTGGTGA GCAGCTCAAC GAGCACGGTC AAAACCTGAT CAAGGTGATG
GCTGAAAACG GTCGTTTGGA AGTACTGCCT GCTGTGGCTC AGCTGTTCGC TGAGTACCGT
TTGGAATGGG CCAAGGAAGT AGAAGCCGAT GTGGTTTCCG CCACCGAGCT TTCCGACGCA
CAACAACAGC AGATTGGTGT TTCCCTAGAG AAACGTCTCG CACGCAAAGT TAAGCTGAAT
TGCAGCGTGG ATGCCGGCCT GATCGCCGGT GTAATTATCA AGGCAGGGGA CCTCGTTATC
GATGGTTCTG TGAGCGGCAA ACTGGCCCGC CTGTCTGATA AGCTGCAATC GTAA
|
|---|
| Protein sequence | MAELTTIARP YAKAAFDFAV EKQAVDSWAE MLGFAALVSE NETMRPLLAG SMASSALAKL
FIDVCGEQLN EHGQNLIKVM AENGRLEVLP AVAQLFAEYR LEWAKEVEAD VVSATELSDA
QQQQIGVSLE KRLARKVKLN CSVDAGLIAG VIIKAGDLVI DGSVSGKLAR LSDKLQS
|
|---|
| |