| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3646 |
|---|
| Symbol | |
|---|
| ID | 4605893 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 4297038 |
|---|
| End bp | 4298579 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639783071 |
|---|
| Product | F0F1 ATP synthase subunit alpha |
|---|
| Protein accession | YP_929518 |
|---|
| Protein GI | 119776778 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0056] F0F1-type ATP synthase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00962] proton translocating ATP synthase, F1 alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00183846 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000012076 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTGA ATTCCACTGA AATCAGCGAT CTGATTAAGC AGCGGATCGA GCAGTTCGAC
GTAGTCAGCG AAGCCCGTAA CGAAGGTACT ATCGTTGCGG TAAGCGATGG CATCATCCGC
GTACACGGCC TGGCCGATGT AATGCAGGGT GAGATGATCG AACTGCCTGG CAACCGTTAT
GCAATCGCGT TGAACCTTGA GCGCGACTCT GTCGGTGCTG TAGTAATGGG TCCTTATGCC
GATCTGGCTG AGGGCGTAAA AGTGAAAACC ACTGGCCGTA TTCTGGAAGT TCCAGTTGGC
CGCGGTCTGC TGGGCCGTGT GGTAAACACG CTGGGTGAGC CAATCGACGG CAAGGGCCCC
ATCGACAACG ATGGTTTTGC TCCTGTTGAA GTGATTGCTC CAGGTGTAAT TGACCGTAAG
TCAGTTTCTC AGCCAGTTCA GACTGGTTAC AAAGCCGTTG ACTCCATGAT CCCAATCGGT
CGTGGCCAGC GTGAGCTGAT CATCGGTGAC CGTCAGACTG GTAAAACTGC GATGGCTATC
GACGCCATCA TCAACCAGCG CGATTCTGGC ATCAAGTGTG TGTACGTGGC TGTAGGCCAG
AAGGCTTCTA CCATCGCCAA CGTAGTACGC AAGCTGGAAG AGCACGGTGC TCTGGCTAAC
ACTGTTGTGG TTGTTGCTTC TGCTTCAGAA GCCGCTGCTC TGCAGTTCCT GGCGCCATAC
TCTGGTTGTA CCATGGGTGA ATACTTCCGT GACCGCGGTG AAGATGCCCT GATCGTATAC
GATGACCTGT CTAAGCAGGC TGTTGCTTAC CGTCAGATCT CCCTGCTGCT GCGTCGTCCT
CCAGGACGTG AAGCTTACCC AGGTGACGTA TTCTATTTGC ACTCTCGTCT GCTGGAACGT
GCTTCCCGCG TGAACGAAGA GTACGTTGAG AAGTTCACCA AGGGCGCCGT GACTGGCAAG
ACCGGTTCTT TGACCGCTCT GCCTATCATC GAAACCCAAG CCGGTGACGT ATCTGCGTTC
GTACCGACCA ACGTAATTTC GATTACCGAC GGTCAGATCT TCCTGGAAAC CAACCTGTTT
AACTCTGGCC TGCGTCCAGC GGTTAACCCA GGTATTTCGG TATCCCGTGT AGGTGGTGCC
GCCCAGACCA AGATCATTAA GAAACTGTCC GGTGGTATCC GTACCGCGCT GGCACAGTAT
CGTGAGCTTG CTGCGTTCTC TCAGTTTGCA TCTGATCTTG ACGATGCAAC TCGTGCCCAG
TTGGAGCACG GTGAGCGTGT TACCGAACTG ATGAAGCAGA AGCAATATGC CCCAATGAGC
GTAGCCGAAC AGGCTGTGGT GATCTTCGCC GCAGAAAAAG GCTTCCTGAA GGGTATTGCT
CTGAAGAAAG TTGGTGATTT CGAAGCCGCT CTGCTCGCTT TCATGAACGC CGAGCATGCC
AACCTGATGA AGCTTATCAA CGATACCGGC GACTATAACG CCGAAATCGA AGCTGAGCTG
AAGGCTGGTC TCGACAAGTT CGTGGCAACC CAAACCTGGT AA
|
|---|
| Protein sequence | MQLNSTEISD LIKQRIEQFD VVSEARNEGT IVAVSDGIIR VHGLADVMQG EMIELPGNRY
AIALNLERDS VGAVVMGPYA DLAEGVKVKT TGRILEVPVG RGLLGRVVNT LGEPIDGKGP
IDNDGFAPVE VIAPGVIDRK SVSQPVQTGY KAVDSMIPIG RGQRELIIGD RQTGKTAMAI
DAIINQRDSG IKCVYVAVGQ KASTIANVVR KLEEHGALAN TVVVVASASE AAALQFLAPY
SGCTMGEYFR DRGEDALIVY DDLSKQAVAY RQISLLLRRP PGREAYPGDV FYLHSRLLER
ASRVNEEYVE KFTKGAVTGK TGSLTALPII ETQAGDVSAF VPTNVISITD GQIFLETNLF
NSGLRPAVNP GISVSRVGGA AQTKIIKKLS GGIRTALAQY RELAAFSQFA SDLDDATRAQ
LEHGERVTEL MKQKQYAPMS VAEQAVVIFA AEKGFLKGIA LKKVGDFEAA LLAFMNAEHA
NLMKLINDTG DYNAEIEAEL KAGLDKFVAT QTW
|
|---|
| |