| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3643 |
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| Symbol | atpC |
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| ID | 4605890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4294240 |
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| End bp | 4294665 |
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| Gene Length | 426 bp |
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| Protein Length | 141 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639783068 |
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| Product | F0F1 ATP synthase subunit epsilon |
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| Protein accession | YP_929515 |
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| Protein GI | 119776775 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) |
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| TIGRFAM ID | [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0268699 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0255612 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCATGA CAGTACATCT TGATATCGTA AGTGCAGAAA CTCGCATTTT TTCCGGTCTG
GTAGAACATC TGCAAGTGAC CGGTGGCGAG GGTGAGCTGG GCATCATGCC TGGTCACGCC
CCTCTGCTGA CTTTTATCAA ACCTGGCATG GTGCGCATCG TTAAGCAGCA CGGTAAAGAA
GAGGTCTTCT ACCTGTCCGG CGGTTTGCTG GAAGTACAAG CCAATTCTGT GTCTGTGCTG
GCTGATGTGG CTTTGCGTGC CAAAGACATT GATGAGCAGG CGGCTCTGGA AGCCAAACGT
CGCGCCGAGG CCCATATGGC CGAAGCCGGT GCCGATTTCA ACTATGCTGC GGCAGCTATT
GAGCTGGCCA AGGCTGTAGC TCAGCTGCGT GTGGTTGAAA CCATCAAGAA AAACATTGCC
AGATAA
|
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| Protein sequence | MAMTVHLDIV SAETRIFSGL VEHLQVTGGE GELGIMPGHA PLLTFIKPGM VRIVKQHGKE
EVFYLSGGLL EVQANSVSVL ADVALRAKDI DEQAALEAKR RAEAHMAEAG ADFNYAAAAI
ELAKAVAQLR VVETIKKNIA R
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