Gene Sama_3640 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3640 
Symbol 
ID4605887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp4289558 
End bp4290322 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content57% 
IMG OID639783065 
ProductDeoR family transcriptional regulator 
Protein accessionYP_929512 
Protein GI119776772 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1349] Transcriptional regulators of sugar metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000875661 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0587725 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAAAC GCAATACTCA GCAGCGCCGC CGCAGCATTA TCGAACTTCT GAATGCTCAG 
GGTGAGGTGA ATGTGGACCA ATTGGCGAGC GAGTTTGCCA CCTCTGAGGT GACTATTCGC
AAAGACCTGG CCGAGCTTGA GAAAGCGGGA CTGCTGTTTC GCCGTTATGG TGGCGCTGTG
CCCTTGCCCC AGGAGCTGAA TGCCCAGGCA GTGGCCATCT CCCCGGTGAA GCTTGCCATA
GCCAAAGAGG CAGCCAAACT CATCCGCGAC CATAACCGCA TCATCATCGA CTATGGCAGC
ACGACCCTGG GGCTTATCCC CGAGCTTGCC CATCGTCGCG GCTTGGTGGT GATGACCAAT
TCGCTGCAGC TCGCCAATGC CATTCACGAA CTGGAGCAGG AGCCCACACT TTTGATGACC
GGTGGCACCT GGGATCCGCA TTCAGAGAGC TTTCAGGGGC TGGTGGCCGA GCAGGTGCTG
CGCTCTTACG ATTTCGATCA ACTCTTTATC GGTGCCGATG GCATAGACCT CAGCCGCGGC
ACCACCACCT TCAACGAACT CGTTGGCCTG TCACGTGTGA TGGCCGAAGT ATCGCGGGAG
GTAATTGTCA TGCTGGAGTC CGACAAGATA GGCCGACGCA TTCCCAATCT CGAGCTGCCC
TGGAGTCAGG TCAGCGCAGT GGTCACAGAT AACAGATTGC CCAAAGAGGC AGTGACCATC
ATAGAGGCCC ATGGGGTGAA GGTGTATCTG GCGGATGTTC AGTAG
 
Protein sequence
MTKRNTQQRR RSIIELLNAQ GEVNVDQLAS EFATSEVTIR KDLAELEKAG LLFRRYGGAV 
PLPQELNAQA VAISPVKLAI AKEAAKLIRD HNRIIIDYGS TTLGLIPELA HRRGLVVMTN
SLQLANAIHE LEQEPTLLMT GGTWDPHSES FQGLVAEQVL RSYDFDQLFI GADGIDLSRG
TTTFNELVGL SRVMAEVSRE VIVMLESDKI GRRIPNLELP WSQVSAVVTD NRLPKEAVTI
IEAHGVKVYL ADVQ