| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3627 |
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| Symbol | |
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| ID | 4605874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4269142 |
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| End bp | 4271271 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639783048 |
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| Product | signal transduction protein |
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| Protein accession | YP_929499 |
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| Protein GI | 119776759 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAATT ATAACCTTTT CAGTGACCTG ATTGAGTATA TTCCAGTGGG GATTGTCGTC
CATGGTCCTC AATCAGAAAT TTTGTATGCC AATGACAGAG CATCTGAAAT TCTCGGCCTG
AGCACTGCGC AGATGCTGGG GAAGGTAGAT ATTGACCCCG CATGGCGGTT CGACTTTCCC
GATGGCACCC CAATGAGCCT TGCAGATTAC CCTGTAAACC GGGTGCTTAA GTGCAAGGAA
GGTGTATGGG GAATGATTCT GAAAGTGCAC AGGCCTGTTG CTAAGGATGT TGCCTGGGTG
TTGTGTAACG CCTTTCCGAG TATCGGCGAG GATGGCGAAG TCTTACAGGT CATTACGTGT
TTTACCGATA TCTCAGCGCT TAAGCATGCC GAAGAGGCCC TTAAAGCCTC CGAAGAGCGC
TTGAACCTGA TGCTGCAAGG TGCCAATGAC GCGGCATGGG ATTGGGATCT TCGCCAACAC
ACCGTTTACT ACTCTCCCAG GTGGTGGCAG ATGATCGGTA GAGAACCCGA CGAGCTGGAA
CCCACAGAGG ACTTGTGGGT CAAGCTGTTG CACCCGGACG ATTATCAAAA AGTCATGGAC
AAAATGAATG GGTTGTTCGA TAGATCCGGC CCTTCTTCCT TTGATACCGA ATTTAGATTG
CAGACCAAGT CGGGTAGTTA CCTACCCGTG CTTTGCAGAG GGGTTATTCT CCGTGGGGCT
GATGGAACAC CGCTTCGGAT GTCTGGCACT AATATGGATT TAACAGAGCG TAAAGAATCA
GAAGCGCGAA TTTATCAATT GGCCTACTAC GATGTGTTAA CCGGTCTGGC CAACCGAACC
TTGTTAATGG AGCGTCTCAA GGCTGCCATC GCACTCTGTG AGCGCAGTAA ACAGATTGGC
GCGCTGTTGA TTATCGATCT TGATAATTTC AAAATTCTCA ATGACACCAT GGGTCATGAT
GTCGGCGATG CGTTATTAAA AATGGTGGCT GATCGTCTGC TTCAAGCGGT TCGACGCTGC
GAGCTGGTCG CCCGATTGGG TGGTGATGAG TTTGTTATTG TTATGGAAAA TCTGGGCATT
GATGAGCGGG GAGCAGCGCT TAAAGCCAAA TCGGTTGGCC AAAAGGTCCG GGGCTTATTG
AACGACCCTT TTATGTTGGC TGGAAAGCAG CTTCGAACCT CACCCAGCAT CGGGATAGCC
TTGTTTGCCG AGGGCCGCCC TGGCTTGGAG GAACTCCTCA AACAGGCGGA TGTGGCTATG
TATCAGGCAA AGGAAGCAGG CAAAAATGCT TTGCGTTTCT TTGATCCGGC TATGCAGGCT
GCGGTGGAGG AGCGGGTTGC GCTGGAAAAT GATTTACGCA ACGGGGTGTT GGAAAACGAG
TTCAGGCTTT TCTGTCAGCC TCAAGTTGAC GCGTGTGGCA GGCTGTGTGG TGGTGAAGTG
TTGATCCGCT GGCAGCATCC GGTTCGAGGC CTGGTGATGC CCAACCAGTT TATCCCTTTG
GCTGAGCAAA CCGACCTGAT CATACCTATA GGGGAATGGG TATTGCGCAA GACTTGTGAG
ACTTTGGTTG AATGGGAGAG TCATCCGAGC CTGGCACAAA TCTCACTGTC GGTTAACGTC
AGTGTGAATC AGGTTCGAGA CCACAATTTT GTTGAACGGG TATTGGCAAT AATTGATGAC
TGCGGCGCCA ATCCTGCGCG CATTATGCTG GAATTAACTG AAAGTTTGAT GGCTGAGAAT
GTTGAGGAAA TCATCTTAAA AATGAATGCT CTACGAGTGC GAGGGGTTCG CTTTTCAGTA
GATGATTTTG GTACAGGCTA TTCCTCTCTT AGTTACCTTA AACGCTTCCC CTTATCAGAG
CTCAAAATTG ACCAGTCTTT TGTCAGAGAA ATAGCTTTAA ATCAACATGA TGCAGTAATT
ACCGAGATTA TTATTACACT GGCTAAAAAG TTGGGCTTGG GTGTGCTGGC TGAAGGGGTT
GAAACCGAAG ATCAATTAAA TTTCTTACTG GCCCATGACT GCAGCTATTT CCAGGGCTAT
TTGTTCGGCA AACCCTGCGC GATAGAGCTG TTCGCTAGCA GCTTTATGGA TCTGATGGAG
CCGGTCAGCA GACATATCAG ACAAGGCTAA
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| Protein sequence | MINYNLFSDL IEYIPVGIVV HGPQSEILYA NDRASEILGL STAQMLGKVD IDPAWRFDFP
DGTPMSLADY PVNRVLKCKE GVWGMILKVH RPVAKDVAWV LCNAFPSIGE DGEVLQVITC
FTDISALKHA EEALKASEER LNLMLQGAND AAWDWDLRQH TVYYSPRWWQ MIGREPDELE
PTEDLWVKLL HPDDYQKVMD KMNGLFDRSG PSSFDTEFRL QTKSGSYLPV LCRGVILRGA
DGTPLRMSGT NMDLTERKES EARIYQLAYY DVLTGLANRT LLMERLKAAI ALCERSKQIG
ALLIIDLDNF KILNDTMGHD VGDALLKMVA DRLLQAVRRC ELVARLGGDE FVIVMENLGI
DERGAALKAK SVGQKVRGLL NDPFMLAGKQ LRTSPSIGIA LFAEGRPGLE ELLKQADVAM
YQAKEAGKNA LRFFDPAMQA AVEERVALEN DLRNGVLENE FRLFCQPQVD ACGRLCGGEV
LIRWQHPVRG LVMPNQFIPL AEQTDLIIPI GEWVLRKTCE TLVEWESHPS LAQISLSVNV
SVNQVRDHNF VERVLAIIDD CGANPARIML ELTESLMAEN VEEIILKMNA LRVRGVRFSV
DDFGTGYSSL SYLKRFPLSE LKIDQSFVRE IALNQHDAVI TEIIITLAKK LGLGVLAEGV
ETEDQLNFLL AHDCSYFQGY LFGKPCAIEL FASSFMDLME PVSRHIRQG
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