Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3624 |
Symbol | |
ID | 4605871 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 4263188 |
End bp | 4266004 |
Gene Length | 2817 bp |
Protein Length | 938 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639783045 |
Product | protease, putative |
Protein accession | YP_929496 |
Protein GI | 119776756 |
COG category | [S] Function unknown |
COG ID | [COG4412] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03296] M6 family metalloprotease domain [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00224012 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCAAAC GATTTAATAC GCCCAAGCTC TGTGCCTTGG GGATTCTACT GGCGCTGGCC GGTGGTCAGG CGCTGGCGGC ACCTGCCATG GGTTCACCGG CCGACAGTGG CGTTATCAAT AAAGAGCGCG TGCTTTACTG GCTTATCAAG CGTGGTGAAA TTGCCGAAGA TGCCAGTGAC GAAACCAAAG CCGCTGCCGT GGCTGCGTTC GTGGCCCGGG CCAAATCGTC CACACCCGCG ATGGAGCAAA TCAAAGCTCA GGAGCAAAGC CTTGCCAGTA AGGCTCGCTA TGCTCAAAAG CTGCGCAGCC AATACCAGCA GGTGGATGAC GCCGATGTCA CCAAAACCGT TAAGGTACTT GGCGTGTTGG TGGATTTTCC GGATCTGCCC TACAACAATA ACCGCCTGAC AGCGGGTGAT ACTGACATGT ATTACTCCAG CTATCCGGCA ATTCATTATT CCCAGATGCT GTTTTCTGCT TCGGGCTTTA CCGGACCGTC CAACCAGACG TTGATTTCCG GGTTTCAATA TTTCCAGCAG GCTTCGGGCA ACACCTTTTT CTTCACCGGC GCAGTCCGTG ATTGGGTGCG GGCCGACAAC AACGCCGCCT ACTATGGTGG TAACGACCCC AGCAACGAAG ACAACGACAA GGCTGTGCCC GAGTTGGTGC TGGAGGCTGT CACCAAGGCA GTGGCTGGCA TGAGTGCCTC CGAGCTTGCC AGCTATGACG TGGAAGACCC ATACGATATC AACAGTAACG GCAACCTCAA CGAACCAGAC GGCATTATCG ACCACATCAT GCTGTTCCAT TCCAGCATTG GTGAAGAAGC CGGTGGTGGC GTGCTCGGCG CCGATGCTAT CTGGTCACAC AGATTCTTTA TCCAGAGTGA TCCCTCTGCG TACGGCAAGG CCATTCCCGG CACCAACCTG AGAGCCTATG GCTACACGGT GCAGCCCATA GATGCCGCTG CCGGGGTGTG CACCCACGAA TTTGGCCATG ATCTTGGTCT GCCCGATGAA TATGACTACG ACCCGGACGG TGATGGCTCG CCTGTGGGTA GCTGGTCGCT GATGTCCGGT GGTAGTTGGA CTGGTACTGT GGCGGGTTCG GAGCCAGTGG GTTTCAGTCC TTATGCGCGC TCATTCCTGC AGCGCGAATA CAAGGGTAAA TGGGTTAAGG AACAGGAAAT CAGCCTCGAT AGCCTGAATT CTGCCGGCAC CGATTTCAAT CTGGTGGAAG GGGTCAATGC CAACGGGGTT AACCAGCTGT CACTTAAGGT GCCCAGCGAG CCTCTGCCGT TCAAGGCGCC CTATGCCGGA GACTATCAGT ACTACTCCAA TAAGGGGCAT AAGCTGAACA ATGCCATGTC CTTCAACGTG ACCCTGCCTG TGGTGGATTC TCTCACGTTG AAAATGCGCG CCCACTGGGA TATCGAGTTC GACTTCGACT ATATGCAGGT GCAGGTGGAT GGTACGCCCA TTCCGGGCAA CCACACAAAG GCCACCAGTT ATTACGAGGC AGGACGCAAT GTTATTACCG GTAGCTCAGC CAATATTGCC GGAAACGAAG GTCCTGATCA CTGGGTTGAG CTGACATACG ATCTCAGCGC TTACAAGGGC ATGAGCAAGC AGATCAGCAT AGTGTACAAA ACCGACGAGT TTGAAGGGGG TTACGGTATC GCCATCGATA ACCTGTCTAT CGTCTCCGGC AGTGAAACCC TTTACAGCGA TGATGCCGAA ACCAGCGACA AGATGATGTT GGCAGGCTTT GTTCGCACCA CGGATACCCG TCCGGGCAAT GACCGCCGCT ATCTGATCCA ACTGCGCAGC CAAAACGGTA TCGACAAGGG GCTGGCAAGC CACGGCTACA GTCCCGGTGT GGTGTTATGG TTTGAAAACT TCGATTACAG CGATAACAAC ACCACTGAGC ACCCCGGCTA TGGCCTGATT GGGGTAGTGG ATGCGGATCA GAACCTGATT GGTACCCGTG GCACAGATGT GCAGATTCGC GATGCGGCCT TCAGTATCCG TCAGCAAACA GCGTACGCCG GTGATACCAA CCTCGGCCCT GTGAGTTTGT TCGATGATTC ACTGGATTAC AGTGCGCCGC TCAAGCCCCA GGCGGGGATG ATATTGCCTG AGCTCGGCCT GACCATGGAA GTGATCCAGC TCGCCGCCAA TAACAGCACG GCAACGGTAC GACTGAAGAA ACACGACGGC AGTGTGCCTG AGCCAACGGA CATGAACGTC AGCGTGGGGG TCACCTTCTC TGGTGCTACG GCAAACTTTA CCAGCACTGT CACCGGTGGC GACGGTAATT ACAGCTACTT CTGGGACTTT GGTAATGGCG CCAGTTCTAC TCAGGCCAAC CCGAGTTACA CCTACGGTAA TACCGGAACC TATGACATCA GCCTGACGGT GACCGATGGC AAAGGTGTTG GGGTGACTGT GACTCAGCAA TTGTCGGTAA CTGTGCCCGT CACGGCGAGT TTCAGTCAGA GCGTCAGTCA GTTAACCGTC AGTTTTACCA ACAGCAGCAG TGGTGGTGAT GGAAACCTTA GCTACACCTG GAGCTTCGGT GATGGCCAAA GCAGCACAGC TGCCTCGCCA AGCCATACCT ATGCAGCGGC GGGCAGCTAC ACTGTGACCC TCACTGTGAC CGATGGCAAG GGGGTTTCCT CTACCCGCAG CGCCAGCGTA ACCGTTAGCG CACCTGCAGT AACACCTTCA GATGGTGGTT CGGGTGGTGG CAGCCTGGGA TGGTTGGCCA CCCTGGCGCT GGTGCTTGCC GGTATGGCAA GACGCAGACA AGCCTGA
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Protein sequence | MVKRFNTPKL CALGILLALA GGQALAAPAM GSPADSGVIN KERVLYWLIK RGEIAEDASD ETKAAAVAAF VARAKSSTPA MEQIKAQEQS LASKARYAQK LRSQYQQVDD ADVTKTVKVL GVLVDFPDLP YNNNRLTAGD TDMYYSSYPA IHYSQMLFSA SGFTGPSNQT LISGFQYFQQ ASGNTFFFTG AVRDWVRADN NAAYYGGNDP SNEDNDKAVP ELVLEAVTKA VAGMSASELA SYDVEDPYDI NSNGNLNEPD GIIDHIMLFH SSIGEEAGGG VLGADAIWSH RFFIQSDPSA YGKAIPGTNL RAYGYTVQPI DAAAGVCTHE FGHDLGLPDE YDYDPDGDGS PVGSWSLMSG GSWTGTVAGS EPVGFSPYAR SFLQREYKGK WVKEQEISLD SLNSAGTDFN LVEGVNANGV NQLSLKVPSE PLPFKAPYAG DYQYYSNKGH KLNNAMSFNV TLPVVDSLTL KMRAHWDIEF DFDYMQVQVD GTPIPGNHTK ATSYYEAGRN VITGSSANIA GNEGPDHWVE LTYDLSAYKG MSKQISIVYK TDEFEGGYGI AIDNLSIVSG SETLYSDDAE TSDKMMLAGF VRTTDTRPGN DRRYLIQLRS QNGIDKGLAS HGYSPGVVLW FENFDYSDNN TTEHPGYGLI GVVDADQNLI GTRGTDVQIR DAAFSIRQQT AYAGDTNLGP VSLFDDSLDY SAPLKPQAGM ILPELGLTME VIQLAANNST ATVRLKKHDG SVPEPTDMNV SVGVTFSGAT ANFTSTVTGG DGNYSYFWDF GNGASSTQAN PSYTYGNTGT YDISLTVTDG KGVGVTVTQQ LSVTVPVTAS FSQSVSQLTV SFTNSSSGGD GNLSYTWSFG DGQSSTAASP SHTYAAAGSY TVTLTVTDGK GVSSTRSASV TVSAPAVTPS DGGSGGGSLG WLATLALVLA GMARRRQA
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