Gene Sama_3616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3616 
Symbol 
ID4605863 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp4256169 
End bp4257911 
Gene Length1743 bp 
Protein Length580 aa 
Translation table11 
GC content57% 
IMG OID639783037 
Productiron-sulfur cluster-binding protein 
Protein accessionYP_929488 
Protein GI119776748 
COG category[C] Energy production and conversion 
COG ID[COG1149] MinD superfamily P-loop ATPase containing an inserted ferredoxin domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCGCAAAA TAAACAGAAA AACACCGACC CTTACGTACA GAAACAGCCA AAGAACTGTT 
CAGGAACGCA ACGTGAGCAT GATAGAGACA ACACGCAGGG CCAGACACGC GGATATCCGC
AGTCAGGTAT TGGCACAAAC CCGGATCCTC GGGAACCTGA TCCCACCCAC GGTGAGTTAT
TCCACCGAGG GACATGTCCT TATTCTCGGC GCAGAGGACT TGGCCCGTCT GGCCGCAGGC
AAGCTGTCTG CCATGGCGAG CCTGGTGATT CTGGCCACCG ACGATATTTC CAGTCAGGAT
GAAGCGCACC TCGAGCGGGT GATGAATGCC GCCCCCGATG TCGAGAGTTA TTACAACAAG
CTGGTGTCCA TCAAGGGCTT TCTTGGTCAG TTTCAGGCTA CGGTGGAGCA AAATGGCACC
CAGGCCCAGT TGTCTACCGT GGCGATTCGC CGCCCCCATT TCGACATAGT GCTTGATCTG
TCCATTGAGC CTGCCATTCA GCTGGAACTG CTGCCACCCG GCTATTTTCA TGTTGGGCAG
GACGAAGCCA AACTGGCTGA TGCGGTGGCG CAAATTCCCG ATTTGGTCGG CCAGTTCGAC
AAACCCCGCT ATGTGAAGGT GAATGCCGAC CTGTGCGCCC ACAACCGCAA TGGGCTCAAT
GGTTGCAACC GCTGCCTCAA TTTCTGCCCC GCTGATGCCA TTCAGAGCGT GGAAAAGAAA
ATCGAAATCG ACCCTTACCT GTGTCACGGT GCCGGAAGCT GTACCAATGC CTGTCCAACG
GGTGCCATCA GTTACGATTT GCCAAACCCT CAGGCGTTGC ACAGTTTCCT CAACAAACTG
GTTTCCCGTT TTCGCGATGA GGCCCTCGAA GCGCCGGTGA TCCTGTTCCA CGACCAGAAT
CAGGGCGCAG CGCTCATCAA TGACACCTTG CCAGGAGAGG TTCTGCCGGT AGCACTGGAA
GAAATCACCG TGGCGTCAAT GGACCATTGG CTGGCGGCTC TGGCGTGGGG TGCCCGCGAA
GTCTTGGTGC TCAATACCCA GGCCACAGCG CCCACCCTCA CCACCATGCT CAAGGGCGAA
ATTGCACTGG CCTGTCGTAT TTTGGCCGAA ATGGGTCAGC CAGAGCGCGT GCGTTTGATT
GACGAGGCTG AGCTGGCTGC GCTGACGCCT GCACTGGATA TCAGTCTGGA TTGGCCGGTG
ACGGTTCCAG CCGCCTTTGG CGGTGGCAGC AAGCGCGACA CCCTGTATGC CGCGATTGAT
CACCTCAACA GTCAGGCTGC CGATATCAAC AGCATTCTGC CCATGGGCAA CATCCCCTTC
GGTAAGGTCA CCGTCGCCAC CGATAACTGC ACCCTGTGTA TGTCCTGTGT GGCTATTTGT
CCCACAGCCG CCCTCAAGGA CGGCGGAGAT GAACCCAAGC TGCTGTTTAC CGAACAAAAC
TGTGTGCAGT GTGGCCTCTG TGAAGCTGCG TGCCCCGAGA AGGTTATCAG CCTGGTGCCC
CAGGTGAATT TTGATGCTCC CAGCCGTCAG GCGGCGCGGG TACTCAAGGA AGAAAAACCC
TTTGAGTGTG TGCGCTGCGG CGCGCCCTTT GCGACCCAAT CCATGGTGCA CCGGATGCTG
GATATGGTCG GCATGCACTC GGCATTTTCC GCCAACATCG AACGACTCAA GATGTGTGGC
GATTGCCGCG TGAAAGACAT GTTTGAAGAC ATCCTTCAAG ATCCGGAAAA GCAACTGAGA
TAA
 
Protein sequence
MRKINRKTPT LTYRNSQRTV QERNVSMIET TRRARHADIR SQVLAQTRIL GNLIPPTVSY 
STEGHVLILG AEDLARLAAG KLSAMASLVI LATDDISSQD EAHLERVMNA APDVESYYNK
LVSIKGFLGQ FQATVEQNGT QAQLSTVAIR RPHFDIVLDL SIEPAIQLEL LPPGYFHVGQ
DEAKLADAVA QIPDLVGQFD KPRYVKVNAD LCAHNRNGLN GCNRCLNFCP ADAIQSVEKK
IEIDPYLCHG AGSCTNACPT GAISYDLPNP QALHSFLNKL VSRFRDEALE APVILFHDQN
QGAALINDTL PGEVLPVALE EITVASMDHW LAALAWGARE VLVLNTQATA PTLTTMLKGE
IALACRILAE MGQPERVRLI DEAELAALTP ALDISLDWPV TVPAAFGGGS KRDTLYAAID
HLNSQAADIN SILPMGNIPF GKVTVATDNC TLCMSCVAIC PTAALKDGGD EPKLLFTEQN
CVQCGLCEAA CPEKVISLVP QVNFDAPSRQ AARVLKEEKP FECVRCGAPF ATQSMVHRML
DMVGMHSAFS ANIERLKMCG DCRVKDMFED ILQDPEKQLR