| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3613 |
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| Symbol | |
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| ID | 4605860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4252329 |
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| End bp | 4255178 |
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| Gene Length | 2850 bp |
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| Protein Length | 949 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639783034 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_929485 |
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| Protein GI | 119776745 |
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| COG category | [C] Energy production and conversion
[R] General function prediction only |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.982249 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATTGA CACGCACCTC CACCGAGGCC CGTCAGGCAG AAAAGCCCAG CCTCGGCATG
AATCGCCGTC AGTTCCTCAA GTCAGCCGGT TTTGCCACCG GTGGTATCGC CGCTGCCTCC
ATGCTGGGTA CCGGCATGAT GCGCCGCGCC GAAGCCAAAG ACGTGCCACA CAATGCCCCA
ACCGAAGTGA AGCGTACCAT CTGCTCTCAC TGCTCTGTGG GTTGCGGTAT CTACGCCGAA
GTACAAAATG GCGTGTGGAC TGGTCAGGAA CCGGCTTTCG ACCACCCCTT CAACCAGGGC
GGCCACTGTG CCAAGGGTGC CTCTCTGCGT GAACACGGCC ACGGTGAAAA GCGCCTCAAG
TACCCAATGA AACTTGAAGG CGGTAAGTGG AAGAAACTCA GCTGGGATCA GGCCATCAAC
GAGATTGGCG ACAAGATGCT CAGCATCCGC GAACAATCCG GTCCCGATTC CGTGTATTTC
ATGGGTTCGG CCAAGTTCTC CAACGAACAA TCTTATCTGT ACCGCAAACT CGCGGCCATG
TGGGGCACCA ACAACGTCGA CCACTCGGCC CGTATTTGTC ACTCTACCAC TGTAGCCGGT
GTGGCCAACA CCTGGGGTTA TGGTGCGCAA ACCAACTCCT TCAACGACAT GCGCAACTCC
AAGTGCATGA TGTTTATCGG CTCCAACCCA ACCGAAGCGC ACCCCGTTGC CATGCAGCAC
GTGCTCACAG GTAAAGAGCG CGGCGCCAAA ATCATTGTGG TTGACCCACG TTTCACCCGT
ACTGCGGCTA AATCCGACGA GTACGTGCAT ATCCGTCCCG GTACCGATAT CCCCTTCATC
TACGGTCTGC TGTGGCATAT CTTCGAAAAC AGCTGGCACG ATGAGGCCTT TATCAAGTCC
CGTGTATACG GTATGGAACG TATTCAGGAC GAAGTGAAGC GCTGGACGCC GGAAGAAGTG
GAAAACGTGG TGGGTGTCTC CAAGGCACAA ATGTACCGCG TGGCCAAGAT GATGGCCGAA
CACAAGCCAG GCACCATCGT TTGGTGTATG GGTGGTACCC AGCACCACGT AGGTAATGCC
AACACCCGCG CTTACTGTAT TCTGCAGTTG GCTCTGGGCA ACATGGGCGT GTCCGGTGGC
GGTACCAACA TTTTCCGTGG CCACGATAAC GTACAGGGCG CCACCGACTT TGGTCTGCTG
TTCGACAACC TGCCAGGTTA CTATGGTCTG ACTTCCGGTG CCTGGGCGCA CTGGAGCAAC
GTATGGGATC TGGATCCTGC CTGGGTATCC GGCCGCTTCG ATCAGGGCGA GTACCTCGGC
AAGCAGCCAC AAACCACCGC TGGTATTCCT TGTTCCCGCT GGCACGATGG TGTGCTGGAA
GACAAGACCA AGATTGCCCA GAAAGACAAC ATTCGTCTGG CATTCTTCTG GGGCCAGTCA
GTCAACACCG AAACCCGTGG CCGTGAAGTG CGTGAAGCAC TGAACAAGAT GGACACAGTG
GTCGTAGTTG ACCCCTTCCC AACCATGGCC GGTGTTATGC ACCAGCGCAC TGACGGTGTG
TACCTGCTGC CTGCCGCCAC CCAGTTCGAG ACCTATGGTT CGGTAACTGC CTCCAACCGT
TCGCTGCAGT GGCGCGATAA GGTCATTGAG CCGCTGTTCG AATCACTGCC TGACCACGTG
ATCATGTACA AACTGGCCAA GAAGTGGGGC GTGGAAAAAG AATTCTGTAA GCACATCCAG
GTCAACGGTG ACGAGCCGCT GGTGGAAGAT GTGACCCGCG AATTCAACCG CGGCATGTGG
ACCATCGGTT ACACAGGCCA GAGCCCTGAG CGTCTGAAGA TGCACCAGCA AAACTGGGGC
ACCTTCGATG TGAACAGCCT CGAAGCACCC GGTGGCCCAG CCAAGGGTGA GACCTATGGT
CTGCCATGGC CATGTTGGGG TACAGCCGAG ATGAAGCATC CCGGTACCCA AATCCTTTAC
CGTACCGACC GTGAAGTGCG TTTCGGTGGT GGTAACTTCC GTGCCCGCTT CGGTGTGGAG
CATGAAGGTA ACAACCTTCT GGCGGAAGGC ACCTACTCCA AGGGCGCTGA AATTCAGGAC
GGTTACCCCG AGTTTACCGC TGACATGCTC AAGCAGCTCG GCTGGTGGGA TGACCTGACC
GAAGAAGAGA AGAAATACGC CGAAGGCAAG AACTGGAAGA CCGACGTATC CGGCGGTATC
CAGCGCGTTG CCATCAAGCA CGGTTGTATT CCTTACGGTA ACGCCAAGGC CCGTTGTATC
GTGTGGAACT TCCCGGACGA TATCCCGCTG CACCGTGAGC CGCTGTACAC CCCACGTCGT
GATTTGGTGG CCAAGTATCC AACCTACGAC GACCGCATGG TTCACCGTCT GCCAACCCTG
TACAAGTCAA TCCAGGAGAA GGACTTCTCC AAGGACTTCC CTCTGGCATT GACCTCTGGC
CGCTTGGTGG AATACGAAGG TGGTGGTGAA GAAACCCGCT CCAACCCATG GCTGGCAGAG
CTGCAGCAGG AGATGTTTAT CGAAATCAAC CCGGGGGATG CCGCTGACCG TGGTATCCGC
GATGGTGACG ACGTGAAAGT TCATGGCCCA GAAGGCGCTG TGATCACCGT TAAAGCCATG
GTGACCCCAA GGGTGATTGC CGGTGAATGC TTTATGCCAT ATCACTTTGC GGGCATCTTT
GAAGGTGAGA GCTTGGTTAA GAATTACCCT GAAGGCACAG TGCCTTACGT ACAGGGTGAA
TCTGCCAACA CAGTACTGAC CTATGGTTAT GACCCTGTGA CCCAGATGCA GGAAACCAAG
TCCAGTCTGT GCCAAATCAC TAAAGCCTGA
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| Protein sequence | MRLTRTSTEA RQAEKPSLGM NRRQFLKSAG FATGGIAAAS MLGTGMMRRA EAKDVPHNAP
TEVKRTICSH CSVGCGIYAE VQNGVWTGQE PAFDHPFNQG GHCAKGASLR EHGHGEKRLK
YPMKLEGGKW KKLSWDQAIN EIGDKMLSIR EQSGPDSVYF MGSAKFSNEQ SYLYRKLAAM
WGTNNVDHSA RICHSTTVAG VANTWGYGAQ TNSFNDMRNS KCMMFIGSNP TEAHPVAMQH
VLTGKERGAK IIVVDPRFTR TAAKSDEYVH IRPGTDIPFI YGLLWHIFEN SWHDEAFIKS
RVYGMERIQD EVKRWTPEEV ENVVGVSKAQ MYRVAKMMAE HKPGTIVWCM GGTQHHVGNA
NTRAYCILQL ALGNMGVSGG GTNIFRGHDN VQGATDFGLL FDNLPGYYGL TSGAWAHWSN
VWDLDPAWVS GRFDQGEYLG KQPQTTAGIP CSRWHDGVLE DKTKIAQKDN IRLAFFWGQS
VNTETRGREV REALNKMDTV VVVDPFPTMA GVMHQRTDGV YLLPAATQFE TYGSVTASNR
SLQWRDKVIE PLFESLPDHV IMYKLAKKWG VEKEFCKHIQ VNGDEPLVED VTREFNRGMW
TIGYTGQSPE RLKMHQQNWG TFDVNSLEAP GGPAKGETYG LPWPCWGTAE MKHPGTQILY
RTDREVRFGG GNFRARFGVE HEGNNLLAEG TYSKGAEIQD GYPEFTADML KQLGWWDDLT
EEEKKYAEGK NWKTDVSGGI QRVAIKHGCI PYGNAKARCI VWNFPDDIPL HREPLYTPRR
DLVAKYPTYD DRMVHRLPTL YKSIQEKDFS KDFPLALTSG RLVEYEGGGE ETRSNPWLAE
LQQEMFIEIN PGDAADRGIR DGDDVKVHGP EGAVITVKAM VTPRVIAGEC FMPYHFAGIF
EGESLVKNYP EGTVPYVQGE SANTVLTYGY DPVTQMQETK SSLCQITKA
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