| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3603 |
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| Symbol | |
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| ID | 4605850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 4238369 |
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| End bp | 4240294 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 639783024 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_929475 |
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| Protein GI | 119776735 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCGTT TTATTCGGCT CGTCATTGCA GGGATGATGT CACTGCTGGT AACACAAGCG
ACCCTGGCAC AAGAGCGATA CGGCATGGCA GAGCTTCAGG AAGAGCTGGC ACAATTGGAC
AAATCACTCT CACAAGATAA TCTGGACAGC GTTATCGCTA AGATAGACCT AAGCATTAAC
AAAGCAAAAT ACGAGCCTGT AAGAAAAGCC GCATTATTAA CTTTTAAAGC AGAAAAACTG
CGGTTCCATG GAATATTTTA TATTAATGAA AGCTTATCTA AAGCATTTGA TTTGATTAGT
TATGATAAAC AACCAGAGCT ATACATCTAT GCTATGACAG TTAAAAGCTA TGAAATATAT
GCCTATCAAA ACAACCCTGA ACTGGCAGTA AAATTACTTG AAGATTTACA AAAAAAACCT
GAACTAGAAA ACATACCGTA TATACATGTT ATTTTTTTAA AACACTTACT TGAAACATAT
TATAAACTTC AACTTTTTGA AAAAATCCCA CAACCTCTCT TTCGTCTCTC ACAAATTTCA
AAGGAATTTG AATTAAGTAC AAACAGCAAA GACCTATTAT TTTATCTTGA AGAAGAGCTA
GCATACCACA GCAGTTTGAT TGGTGACACG GAACAGGCCA TTGAGCAATA CGGCAGACTC
GCACAGCACT ATGAGCAGAA AAATCACTCG GAACACATCG CAATTATTTA CTGCAACATT
GCCAATATGT ATTTTCTGCC ATTCGAGGAA AAGGTTCGTT ATGCACAGGC TTCACTGTCT
GCTCACAATA ATATCGCCTG TTCAGATGTG ATGGAGAAAA TTGTTTGGCT CGCCGAAATT
CAGCAAGGCG ACTTTTCCAA TGTAAATCGA TTAATGCACT TCAATCCCGT GCAGCAAATA
CCGCACCTGA ATGATAGCTC TGCATATTAT GCGGGGCTAT CGTACCTATT GCTGGGGAAT
CTGTCAGCGG CGCAAGCAAT GGCTGACAGA ATTACAGCAG AAGATAATTG GGAGCGTCAG
GATCTACTGC AACAAATTTA CCAGAAACAA GGTCATTATC AGGCAGCACT TGAAGCCTCT
CAGCGTTATC ATCAGTTAAG AACCGCAAAA GACGCAGAGG CGCGGTCATT AATGTTAAGC
AGTTTTCAAA CCCGCTTGGC GTTGGCTCAA GAAGAAACAC AGGCCGCAGA GCAAGAAAAA
CAAGCAGCCC GTATTGCAGC GGCAGAACAA AAAGCAAAAT CAAGACTGCA TATTACACTG
ATAGTGATTA GTGCAGGCGT CATGATCACC CTGATATTGT CGCTGTACCT ACTTCGCAGC
CGCCAACACA GGATAAAACT GCAACAACTC TCGGATACGG ATCCCTTAAC GGGATTGCTT
AACCGACGTG CTTTTTTGCA TCAGGCCCGT CAGATGCAGC GTCTTGCCGA ACGTCAGCAG
TTCCCATTAT CCGTTGCTCT GTTGGATCTG GATTTTTTTA AAGCCATCAA TGATAAACAT
GGGCATCACG TCGGTGACGC CGTCTTGCGG GCATTTGCTC ATGGGGCGAA AACGACGTTG
AGGCAAACAG ACATTATCGG TCGCTTTGGT GGTGAGGAGT TTATTCTGCT GGCGACGGAG
AAAGACCCCA TCATATTTGC AGGCCTGCTA CAGCGTGTGC AGCGCGCATT TACTCATGCG
TGTCAGCAGG ATCCCGCCAT TGGCTTTAGC GTTAGCTTCT CAGCCGGTAT TGCTGCTCTT
GAGGATAACG GCGCAACTGA AATCCCTGAC ATTGAAGAGG CGATTCGTCA GGCTGATGAA
CTGCTTTACC GGGCAAAAGC CAACGGTCGC CAGCAGGTTT GTACAGACAG CTTATGTCAG
CGGCTTATGG ACACAGATTG CGACCTTGTT GCACCAGGCC ATCCCGTAAC CCTTAGCGCA
GAGTAA
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| Protein sequence | MLRFIRLVIA GMMSLLVTQA TLAQERYGMA ELQEELAQLD KSLSQDNLDS VIAKIDLSIN
KAKYEPVRKA ALLTFKAEKL RFHGIFYINE SLSKAFDLIS YDKQPELYIY AMTVKSYEIY
AYQNNPELAV KLLEDLQKKP ELENIPYIHV IFLKHLLETY YKLQLFEKIP QPLFRLSQIS
KEFELSTNSK DLLFYLEEEL AYHSSLIGDT EQAIEQYGRL AQHYEQKNHS EHIAIIYCNI
ANMYFLPFEE KVRYAQASLS AHNNIACSDV MEKIVWLAEI QQGDFSNVNR LMHFNPVQQI
PHLNDSSAYY AGLSYLLLGN LSAAQAMADR ITAEDNWERQ DLLQQIYQKQ GHYQAALEAS
QRYHQLRTAK DAEARSLMLS SFQTRLALAQ EETQAAEQEK QAARIAAAEQ KAKSRLHITL
IVISAGVMIT LILSLYLLRS RQHRIKLQQL SDTDPLTGLL NRRAFLHQAR QMQRLAERQQ
FPLSVALLDL DFFKAINDKH GHHVGDAVLR AFAHGAKTTL RQTDIIGRFG GEEFILLATE
KDPIIFAGLL QRVQRAFTHA CQQDPAIGFS VSFSAGIAAL EDNGATEIPD IEEAIRQADE
LLYRAKANGR QQVCTDSLCQ RLMDTDCDLV APGHPVTLSA E
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