| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3581 |
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| Symbol | |
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| ID | 4605828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 4216162 |
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| End bp | 4217100 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639783002 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_929453 |
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| Protein GI | 119776713 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATGATG CCGCTCTGCT TGAAACAACC ACCTTTGCCG ACAGCGCCCT GTGCCTGCAG
GCACTGCTGA ATTCGGTTGA AGATCAGGTG GTTGTCATCG ACATCCAGGG CACCATAGTC
TACACCAACC TTGCCTGGAA CAAGTTTGCC GAAGAGAACG GCATGACACC GGGATACAAC
TGGCTTGGTA CCAACTACTT GCGGGTTTGC GATGGTGCGG CCGAGTCATT CAGCAAAACA
GCCGCCGAAG GTATCAGGCA GGTGATGGCA GGTGCAGAAG CGCAGTTTTA CCTTGAATAC
CCCTGTCACA GTCCCACAAC CCAACGTTGG TTTATGATGC GGGTCACCGA AATTGCCGGT
CTGGAATCGC GCTATTTTGC CATTGCCCAT GTCAATATCA CCGAGCGGAA GCTGTTGGAA
CTGAAGGTTG CCAAGCTGTC GATGCATGAC CCGCTGACCG GCCTCGCCAA TCGGCGTTTA
TTCAACAGCT TTTTACACAA CGAATGGCGC AGAAGCCAAC GGGAACAGGT CCCACTCACC
CTGATTTTAC TGGATTTGGA CCACTTCAAA TCCTGCAATG ATCATTTTGG CCATCTGGTG
GGAGATGAGC ATTTACAGCA GGTCAGTCAG GTGCTCTTGT CGGTATGTCA ACGCCCCACA
GATCTGGCCT GCCGTTTTGG TGGTGATGAG TTTGCACTGG TGCTTGGCAA TACAAACGCT
GCCGCGGGGC TCGGGCTTGC CGAAAAGGTG CGCAGTACAA TCGAAAACCT GAATATCAAA
ATAGAAGATG GGCTGCGTCT AACGTCGAGT CTCGGTATAG CGACCCTGGA GCCGGGGCAG
CAAATGGAAC AGGAAAACAC ACTCTGTTCC TTGGCAGATT CTGCGCTCTA TCAGGCCAAA
GCGGCAGGAA AGAATTGCTG CAAGCAACTG TCCTGCTAA
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| Protein sequence | MNDAALLETT TFADSALCLQ ALLNSVEDQV VVIDIQGTIV YTNLAWNKFA EENGMTPGYN
WLGTNYLRVC DGAAESFSKT AAEGIRQVMA GAEAQFYLEY PCHSPTTQRW FMMRVTEIAG
LESRYFAIAH VNITERKLLE LKVAKLSMHD PLTGLANRRL FNSFLHNEWR RSQREQVPLT
LILLDLDHFK SCNDHFGHLV GDEHLQQVSQ VLLSVCQRPT DLACRFGGDE FALVLGNTNA
AAGLGLAEKV RSTIENLNIK IEDGLRLTSS LGIATLEPGQ QMEQENTLCS LADSALYQAK
AAGKNCCKQL SC
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