| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3562 |
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| Symbol | |
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| ID | 4605809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 4197258 |
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| End bp | 4197938 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639782983 |
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| Product | transglycosylase SLT domain-containing protein |
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| Protein accession | YP_929434 |
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| Protein GI | 119776694 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATTTC GCTGGTCGCT GTTTTCCCTG CTTTTAGTTG CTATCGCCGG CACCAGCGCC
GGTGCTTCTG ATACTCAGTC ATCCAGCGCA GAGAAGCCCC GCATTACCGC GCGCTACTCC
GAAAATGGCA CCAGCACCCA AACCAAGGTA TATCAGTATG TTCAGCCCAA TGGCACTGTG
GCATTCAGCG ACAAGGCCCC TGTCAGTGGC AAGTATGAAA TCCTGCTGTT TGACTGTTAT
GCCTGTAATC CCAAGTCCAA GGTTAATTGG CGCACCATTC GTTTGAATCG CAGTTACGAG
AAAGACATTT TACTGGCTGC CAAAACCTAC TCGCTGGAAC CGGCGCTGAT ACGAGCCGTA
ATCCACGCCG AGTCCAACTT TAATCCCAAG GCGATTTCCC GCACCGGCGC CGTGGGACTG
ATGCAACTGA TGCCGGGCAC AGCCAAGGAC ATGGGCGTGC GTAACTCTTT CCTGCCCCAG
GACAATATTC TGGGTGGCAG CCGTTATCTG TCGCAGATGC TGGACCGATT CCAGGGGGAT
TTAAATCATG CCCTCGCCGC CTATAACGCC GGGCCTACCC GGGTTGAGGA ATACAGTGGT
ATCCCCCCTT ATCCAGAGAC CAAAGCCTAC ATAGAACGGG TCAATATTCT CCTGCAGCGC
TATCGCAATT TACGCACTTG A
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| Protein sequence | MSFRWSLFSL LLVAIAGTSA GASDTQSSSA EKPRITARYS ENGTSTQTKV YQYVQPNGTV
AFSDKAPVSG KYEILLFDCY ACNPKSKVNW RTIRLNRSYE KDILLAAKTY SLEPALIRAV
IHAESNFNPK AISRTGAVGL MQLMPGTAKD MGVRNSFLPQ DNILGGSRYL SQMLDRFQGD
LNHALAAYNA GPTRVEEYSG IPPYPETKAY IERVNILLQR YRNLRT
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