| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3554 |
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| Symbol | |
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| ID | 4605801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 4186156 |
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| End bp | 4189296 |
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| Gene Length | 3141 bp |
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| Protein Length | 1046 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639782975 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_929426 |
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| Protein GI | 119776686 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGTT TTTTTATTGA TCGACCCATT TTTGCATGGG TGATCGCGAT TTTGGTGATG
CTGGCAGGGG TATTGGCTAT CAAAAGCCTG CCCGTGTCCC AGTACCCGAA CATCGCACCA
CCCACCGTGG TGATCTCCGC CAACTACCCA GGCGCCTCCG CCAAGACGCT GGAAGACTCG
GTCACCCAGG TGATAGAGCA GCGCATGACG GGCTTGGACA ACCTGCGTTA TATCAACTCC
ACCAGTGACG GTTTCGGTAA TGCCGAAATC ACCCTGACCT TTAATGCCGA GGCCGATGCA
GACATCGCCC AGGTACAGGT TCAGAACAAG CTGCAATCGG CCATGCCACT GCTGCCACAG
GAAGTACAGG CGCAGGGTGT CAGGGTGAAC AAGTCCACCT CGGGCTTTTT GATGGTACTG
GGTTTTGTGT CGGAAGACGG CAGTCTGACC AAAAATGACA TCGCCGACTA TGTGGGCTCC
AACGTCCAGG ACCCCTTAAG CCGGGTTGCC GGTGTGGGTG AAATTACCCT CTTCGGTGCA
CCTTATGCCA TGCGAATATG GCTAGACCCT CTGAAACTGA CCCAATATAG CCTCACCACA
CAGGACGTGA TTGCCGCGAT TCGCGAGCAA AACGCCCAGG TGTCTGCAGG TCAGCTTGGT
GGTGCGCCTG CGGTACTCGG CCAGGAGCTG AACGCCACAG TATCCGCCCA GAGCCGTTTG
GAAACCCCGG AGCAGTTCCG CAAGATTATT CTCAAGTCCG ATACCAATGG CGCCAAGGTG
TTCCTCGGCG ACGTAGCCCG GGTTGAGCTC GGCGCCGAAA GCTATGTGGT GGAGTCGTTC
TACAACGGCC GTCCGGCCGC GGGTCTTGCC ATCAGCCTGG CAACGGGAGC CAACGCCCTG
GATACCGCGA CCCGGGTGCG GGAAAAAATC GCCGAAATGA AGCCCTTCTT TCCGGCGGGC
CTCGATGTGG TTTATCCCTA CGACACCACC CCCTTCGTTA AGCAATCCAT CGAAGGCGTA
GTGCATACTC TGTTGGAAGC CGTGGTACTG GTATTTGTGA TCATGTACCT GTTCCTGCAG
AACTTTCGCG CAACTCTTAT CCCGACGATT GCCGTACCTG TGGTACTGCT GGGCACCTTC
GCCATTCTGT CGGCCTTTGG TTTCTCCATT AATACCCTGA CCATGTTCGC CATGGTACTG
GCCATCGGCC TCTTGGTTGA CGATGCCATC GTGGTAGTGG AAAACGTTGA ACGTGTGATG
CAGGAAGAAG GCCTGGGGCC GGTTGAAGCG ACCCGCAAGT CGATGGACCA AATCACCGGC
GCCTTGGTGG GTATTGGTTT GACCCTGTCG GCGGTATTCG TGCCCATGGC CTTTATGTCG
GGTTCTACCG GGGTGATTTA CCGTCAGTTC TCTATCACTA TCGTGTCGGC CATGGCGCTG
TCGGTACTGG TGGCCCTGAT CCTGACGCCC GCCCTGTGTG CCACCATGCT CAAGCCACTC
AAGCCCGGCC ATTCCCATGG TCAGCATGGC TTCTTTGGCT GGTTTAACCG CAGTTTTGAA
AAGATGACCT CGCGCTACGA AGGCAGCGTG GCCGCTATTC TCAAGCGCTC CGCCAGGGTG
ATGGCGATAT ATCTGGCATT GGTGGTCGCA ACCGGCTGGA TCTTTATGCG CATGCCCACC
GCCTTCTTGC CCGATGAGGA TCAGGGCATC CTCTTTGCCC AGGTGATCCT GCCGACCAAC
TCCAGCCAGG AGTCCACGGT GAAGGTGCTG GAAAAGATGG ACAAGTTCTT CCGCGAAGAT
GAAAAGGACA ACGTGAACTC TGTGTTCTCG GTGGCCGGCT TCTCCTTTGC GGGCATGGGT
CAGAACATGG GTATTGCCTT CGTTGGCATG AAAGACTGGG CCGTGCGTGA AGGCGAGGGT
CAGGATGTGT TCTCTTTGCA GGGCCGAGCC ATGATGGCCT TCTCCCAGAT TAAAGAAGCC
TTCGTGTTTG CCTTTGCGCC ACCGGCAGTT ATTGAACTCG GTACCGCCAA CGGTTTCGAC
TTCTACCTGC AGGACAAAAA TGGCCAGGGT CACGCCAAGC TGCTGGAGGC CCGTAACCAG
CTGCTGGGCA TGGCGGCACA AAATCCCAAC CTGGTGGGTG TGCGCCCCAA TGGTCAGGAA
GATGCGCCCA TGTACCAGCT GGATATAGAC CATGCCAAGC TGCGCGCTCT GGGTGTGGAT
ATCTCCTCGG TGAACAGTGC CATAGCTACC GCCTGGGGCG GCAGCTATGT GAATGACTTT
ATCGACCGTG GACGGGTGAA GAAGGTGTAC GTACAGGGCG ATGCCGAGTA CCGTATGCAG
CCTGAAGACC TGAACACCTG GTATGTACGT AACGCCAACG GAGAAATGGT GCCCTTCTCG
GCTTTCGCCA CTGGCCGCTG GGACTTTGGC TCACCCCGTC TGGAACGCTT CAACGGCCTG
CCCGCCATGA ACATCCAGGG TGCCACTGCC CCGGGCTACA GTACCGGTGA TGCCATGAAG
GACATCGAAA AGATTGTTGA GCAGTTACCA CCGGGCTTTG GCGTCGAGTG GAATGGCCTG
TCCTATGAAG AGCGACTCTC GGGCAACCAG GCTCCGGCCC TCTATGCCCT GTCGATTCTG
GTCGTGTTCC TGGTACTCGC GGCCCTCTAC GAGAGCTGGT CAGTGCCCTT TGCCGTTGTG
CTGGTTGTGC CGCTGGGGAT CATCGGAGCC CTGCTGGCCA TGAATGGCCG CGGCCTGTCC
AACGACGTGT TCTTCCAGGT GGGCCTCTTG ACCACTGTGG GTCTGGCCAC CAAGAACGCC
ATTCTTATCG TGGAATTCGC CAAGGAATAC TATGAGAAGG GTGCCGGTCT GATTGAGGCC
ACCCTGCACG CAGTTAGAGT GCGTTTGCGC CCGATTCTGA TGACCTCACT GGCCTTTGGT
CTGGGGGTTG TGCCGCTGGC TATTTCTACC GGTGTGGGTT CCGGTGCCCA GAACGCCATA
GGTACCGGTG TACTCGGCGG TATGATGAGC TCGACCTTCC TCGGAATCTT CTTCGTGCCG
CTGTTCTTCG TGATTGTTGA GCGTATTTTC AGCAAGCGCG AGAAACAGGC CCAAACCGGC
GCAGGGGCTG GCAAACACTG A
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| Protein sequence | MARFFIDRPI FAWVIAILVM LAGVLAIKSL PVSQYPNIAP PTVVISANYP GASAKTLEDS
VTQVIEQRMT GLDNLRYINS TSDGFGNAEI TLTFNAEADA DIAQVQVQNK LQSAMPLLPQ
EVQAQGVRVN KSTSGFLMVL GFVSEDGSLT KNDIADYVGS NVQDPLSRVA GVGEITLFGA
PYAMRIWLDP LKLTQYSLTT QDVIAAIREQ NAQVSAGQLG GAPAVLGQEL NATVSAQSRL
ETPEQFRKII LKSDTNGAKV FLGDVARVEL GAESYVVESF YNGRPAAGLA ISLATGANAL
DTATRVREKI AEMKPFFPAG LDVVYPYDTT PFVKQSIEGV VHTLLEAVVL VFVIMYLFLQ
NFRATLIPTI AVPVVLLGTF AILSAFGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
QEEGLGPVEA TRKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SITIVSAMAL
SVLVALILTP ALCATMLKPL KPGHSHGQHG FFGWFNRSFE KMTSRYEGSV AAILKRSARV
MAIYLALVVA TGWIFMRMPT AFLPDEDQGI LFAQVILPTN SSQESTVKVL EKMDKFFRED
EKDNVNSVFS VAGFSFAGMG QNMGIAFVGM KDWAVREGEG QDVFSLQGRA MMAFSQIKEA
FVFAFAPPAV IELGTANGFD FYLQDKNGQG HAKLLEARNQ LLGMAAQNPN LVGVRPNGQE
DAPMYQLDID HAKLRALGVD ISSVNSAIAT AWGGSYVNDF IDRGRVKKVY VQGDAEYRMQ
PEDLNTWYVR NANGEMVPFS AFATGRWDFG SPRLERFNGL PAMNIQGATA PGYSTGDAMK
DIEKIVEQLP PGFGVEWNGL SYEERLSGNQ APALYALSIL VVFLVLAALY ESWSVPFAVV
LVVPLGIIGA LLAMNGRGLS NDVFFQVGLL TTVGLATKNA ILIVEFAKEY YEKGAGLIEA
TLHAVRVRLR PILMTSLAFG LGVVPLAIST GVGSGAQNAI GTGVLGGMMS STFLGIFFVP
LFFVIVERIF SKREKQAQTG AGAGKH
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