| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3537 |
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| Symbol | |
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| ID | 4605784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4168309 |
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| End bp | 4169490 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639782958 |
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| Product | GGDEF family protein |
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| Protein accession | YP_929409 |
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| Protein GI | 119776669 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACATCC AAGCTGAGAT CCTCATTGAG GTCATAGTGC TGTTGACGGC CGCCTGTGCC
GCAGCCTGGG CTCTGCTGGC GGGCCCATTA CGCATAGCGC CAAAGGCATG TCGCCAGTAC
GCGGTGGCCA ATGGATTGTT GATGTTGGGG CTGATTCTCA ATGCGTTACG CACGGAGGGG
GCGAGCTATA TCACTTGGTT CGGCGCCGAT TTAAGCCTCA TTGCCGGCAT CATCATGATG
CGCTTTGGCA CAGTATTCCT GTTTCGACTA CCAATAAACT ACAAGCCTGA GCTGTTGCTG
TTGGCTGTGG TGATATTTGC CATGCTGATG GTACCGCCTT CGGTGGAGTC ACAGCATTAT
CTCGGCATCG TGTTCTCGCT GGCGGCGGCC CTCTTGTTTG TACGTTTGGG TGAATCAACC
TACAAGGGAC TTCTGCCCAG TGTCGGCCAT AACATCACCT TGCTGCTGGT GATGCCATTG
ATACTGGCGG CTGTGCTGTT TTTAGTGCGG CTCGGTCTTA TCATGACCCA GGAAGATGCA
GAAGCCCGTT TTATTTCCAT CCATACCGCT GAAGCTGTGC CCATGCTGTG GTTTTATCTG
GTGCTCAGCC TCAGTATCAA TGTCGTTGCC ATGGGCAATG CCCTTACCCG CCTGGTGCAA
AAAATCAGGG TGCTGGCGGA CAGAGACATG CTGACAGGTC TGTGGAATCG TCGCAGCGCA
GAACTGAGGC TAAGAGAGCT CAACCTGCGC TGGCAGAAGG GGCGAGAACC ATTTGCCATC
GTGTTGCTGG ATTTGGATCA CTTCAAAAAA ATCAACGATA AGCTCGGGCA TCAGGCCGGT
GATGCGGCGC TGCGGCAAGC GGCGCTGATA TTAAGCCATA GTCTCAGAGA AACCGATATG
TTATGCCGTT TTGGCGGCGA GGAGTTTCTG GTTATTTTAT CCGGTGTCGG CATTAAGCAG
GCACATCTGG TGGCCGAAAA ACTGAGAGAG AGTCTGGCTG CAACGGCGCT GCGCTGGGAT
GACGATGAAG TGGTATTGAG CGCAAGTTTT GGCTGCGCCG CGATGGTGGA TGGGATGAGT
GTCTCTCAGC TGATTTCGGC AGCCGACCAC GCCATGTATC AGGCCAAGGC AGGTGGCCGC
AACTGCGTGA TGGACTCAGC GGCCGGGCCA CTCCAGGTCT GA
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| Protein sequence | MDIQAEILIE VIVLLTAACA AAWALLAGPL RIAPKACRQY AVANGLLMLG LILNALRTEG
ASYITWFGAD LSLIAGIIMM RFGTVFLFRL PINYKPELLL LAVVIFAMLM VPPSVESQHY
LGIVFSLAAA LLFVRLGEST YKGLLPSVGH NITLLLVMPL ILAAVLFLVR LGLIMTQEDA
EARFISIHTA EAVPMLWFYL VLSLSINVVA MGNALTRLVQ KIRVLADRDM LTGLWNRRSA
ELRLRELNLR WQKGREPFAI VLLDLDHFKK INDKLGHQAG DAALRQAALI LSHSLRETDM
LCRFGGEEFL VILSGVGIKQ AHLVAEKLRE SLAATALRWD DDEVVLSASF GCAAMVDGMS
VSQLISAADH AMYQAKAGGR NCVMDSAAGP LQV
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