| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3535 |
|---|
| Symbol | |
|---|
| ID | 4605782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4166398 |
|---|
| End bp | 4167657 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639782956 |
|---|
| Product | sensor histidine kinase |
|---|
| Protein accession | YP_929407 |
|---|
| Protein GI | 119776667 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCTGA TCACCGGCGC TTTGCTGTTC ACCCTGTACC GTCAGTTGGT CACAGAGCAG
CAGTATCAGA TAGAACAGCA TCTGGAAACT GAAAAGCAGC GCTATATTCA ACTGGCCCAA
ACCGTTGACC GGCGAAGCTT TGCCGCCCAA ATACGGGCAG CCGATCCCAA ATCCGTATTG
GTGGCCTGGC GCAACAGCTT CGACATAGTC GGTTCCCTGA GTCTGATGCC GGAAGATATT
CCCCTGCTGC CGGAAACGGT GGAGTTTCCC ATTCTGACCG GCGGCCCGGA CAAGCTGCAC
ATACTCACAG GTGGCCTCGT TATCACCCGC TACGGGCCTG TGCTTATCGC CACCCGTACC
GACCAACTGG CGACCCTGAT TAAGAAATTT CTGCGGGCTG CCGTGACCAC CATGACCCTG
ACCATAGTGC TGACCATGGC CCTGGGATAT CTGTTTTCCA AAGCCATTCT GCGCCGCTTG
GTGCAATACA ACCGGCTGGC ACAGCGCATC GAGCGCGGCC ACTACGATAC CCGACTGCCG
GTGAGTTGGC GTCAGGATGA ATTCGATATG CTGGCGCGCC AGTTTAACCG GGTACTGGAC
ACCCTCGAAG CCAACCTCCA GGCAGTGCGC GGGGTAACCG ACAATATCGC CCACGACCTG
CGCACCCCGC TGTCTCACCT TCGCATCGGG CTGGAACAAC TGAGAGATAA GCCCCAGGAA
GAACGCGCAG ATAAAGCCGA GCAGTTGATC GAAGAGCTGG ACTTTTGTCT CGCCACCTTC
GATGCCATGT TGTCTTTGAC CCGTATCGAA GAAGGGCAGC AACAGCTGGA TTTGCAACAG
TTAAGTCTGT CGCAGTTGTG TGCCGATTTG GTGGAAATGG CCGAATTGCT GGCCGAAGAG
CGCGGTCAAA CCCTCAGTCT GGAACTCGGC CGTGAATGCA CGCTGCAGGG CGATAAGCAT
TTGTTGTTTC AAGCGCTGTT TAATCTGGTG GACAACGCCA TCAAGTACGC AGGTGACGGC
GCGGCAATCA GCATCAGCCA GAATGGCCGA GAAGTGGTGA TTGCCGACAA TGGTCCCGGG
ATCCCGCCGG AAAGCCGTGA GCGGGTGTTC GAGCGCCTGG TGCGACTCGA CCCCAGCCGT
CATCATCAGG GCACGGGGCT TGGCCTGTCT ATGGTGAAGG CGATATTATC GCGCCATCAG
GCCCATATAC GCCTCGAAGA CAACCAACCG GGTCTGAGAG CCGTCATCGA GTTTCAATAA
|
|---|
| Protein sequence | MTLITGALLF TLYRQLVTEQ QYQIEQHLET EKQRYIQLAQ TVDRRSFAAQ IRAADPKSVL
VAWRNSFDIV GSLSLMPEDI PLLPETVEFP ILTGGPDKLH ILTGGLVITR YGPVLIATRT
DQLATLIKKF LRAAVTTMTL TIVLTMALGY LFSKAILRRL VQYNRLAQRI ERGHYDTRLP
VSWRQDEFDM LARQFNRVLD TLEANLQAVR GVTDNIAHDL RTPLSHLRIG LEQLRDKPQE
ERADKAEQLI EELDFCLATF DAMLSLTRIE EGQQQLDLQQ LSLSQLCADL VEMAELLAEE
RGQTLSLELG RECTLQGDKH LLFQALFNLV DNAIKYAGDG AAISISQNGR EVVIADNGPG
IPPESRERVF ERLVRLDPSR HHQGTGLGLS MVKAILSRHQ AHIRLEDNQP GLRAVIEFQ
|
|---|
| |