| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3490 |
|---|
| Symbol | |
|---|
| ID | 4605737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 4121257 |
|---|
| End bp | 4122240 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639782911 |
|---|
| Product | cytochrome oxidase assembly |
|---|
| Protein accession | YP_929362 |
|---|
| Protein GI | 119776622 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1612] Uncharacterized protein required for cytochrome oxidase assembly |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.114551 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACTGA GAAACCTGCT CAAACTCACC CTCGCCTGCA CCCTGATGGT GATTTTACTG
GGGGCTTATA CCCGCCTGTC GGATGCCGGC CTGGGTTGCC CCGACTGGCC CGGCTGCTAT
GGTCACTTTA AAGTCCCCTC TGCGGCGCAC GAGCTGGCCA AAGCCGAGTC GCTGTTTCCT
GAGCATACGA TTGATCCCGC CAAAGCCTGG CCGGAAATGA TCCACAGGTA CATTGCCAGC
AGCTTGGGCT TACTGGTGAT CTTGGTGCTG GTAGCCTGTT ACAGATTGAA GGAAGCACCG
CGCAAACTGC CCATATTTAT CCTGCTGCTG ATTTTGTTTC AGGGCGCGTT GGGGGCCTGG
ACTGTCACCA TGAAGCTCAT GCCCGTGGTA GTCATGTCGC ATTTGCTTGG CGGCTTTACC
CTACTGTCGC TGCTGACCTT GCTGTATTTG CGCACCAGTG GTTTCCGCAT CCCTGGTGGA
GATCCGGGCA TGCGTCAGTA TCAGCGACTG GCGCTGGCCT GTGTTGGGGT ATTGGTTGCG
CAGATCCTCC TGGGTGGCTG GACCTCATCC AACTACGCGG CCCTCGCCTG CACAGAGTTA
CCGTTTTGCG AGGGCGATTG GACAACCAAC CTGAAAATTG CCGATGCCTT TTCTCCCTTT
CAGGGTACGC ACCCCAGCTT TGAATTTGGT GTGCTGGACT ATCACGCCCG CATGACCATA
CACATCGCGC ATCGCTTTGG TGCCATGATT ACCGCGGCTC TGCTGGGGCT GTTGGCGTTT
CGCATCATAA ACCGGGCCCA TAGCAAGGTG CTGCGCAATG CCGGTTGGGT ACTGGCTGGT
TTTTTGGTGC TGCAACTTGG CCTGGGTATT TCCAACGTCG TGCTGCACCT CCCTCTGGCC
ATTGCCGTTG CCCACAATCT GGGGGCCGCA TTTTTGCTGG TCACACTGGT CTTTATTAAT
TACGCACTGT GGCGTAAAGC CTGA
|
|---|
| Protein sequence | MTLRNLLKLT LACTLMVILL GAYTRLSDAG LGCPDWPGCY GHFKVPSAAH ELAKAESLFP
EHTIDPAKAW PEMIHRYIAS SLGLLVILVL VACYRLKEAP RKLPIFILLL ILFQGALGAW
TVTMKLMPVV VMSHLLGGFT LLSLLTLLYL RTSGFRIPGG DPGMRQYQRL ALACVGVLVA
QILLGGWTSS NYAALACTEL PFCEGDWTTN LKIADAFSPF QGTHPSFEFG VLDYHARMTI
HIAHRFGAMI TAALLGLLAF RIINRAHSKV LRNAGWVLAG FLVLQLGLGI SNVVLHLPLA
IAVAHNLGAA FLLVTLVFIN YALWRKA
|
|---|
| |